SCOPe 2.06: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.06
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.36: Thiamin diphosphate-binding fold (THDP-binding) [52517] (1 superfamily)
3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465

Superfamily c.36.1: Thiamin diphosphate-binding fold (THDP-binding) [52518] (9 families)

there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules
two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules

Family c.36.1.10: TK-like PP module [88760] (3 proteins)
different order of the modules, PP module is N-terminal, Pyr module is next to it followed by a Rossmann-like domain
Protein automated matches [254698] (2 species)
not a true protein

Species:

Escherichia coli [TaxId:83333] [324638] (1 PDB entry)
- Domains for 5hht:
  1. Domain d5hhta1: 5hht A:2-332 [324668]
    Other proteins in same PDB: d5hhta2, d5hhta3, d5hhtb2, d5hhtb3, d5hhtb4
    automated match to d1qgda2
    complexed with ca, edo, tdp
  2. Domain d5hhtb1: 5hht B:2-332 [324639]
    Other proteins in same PDB: d5hhta2, d5hhta3, d5hhtb2, d5hhtb3, d5hhtb4
    automated match to d1qgda2
    complexed with ca, edo, tdp
Escherichia coli [TaxId:83334] [255937] (3 PDB entries)
1. Domains for 3lpl:
  1. Domain d3lpla1: 3lpl A:56-470 [247486]
    Other proteins in same PDB: d3lpla2, d3lpla3, d3lplb2, d3lplb3
    automated match to d2ieaa2
    complexed with epe, mg, po4, tdp; mutant
  2. Domain d3lplb1: 3lpl B:56-470 [247489]
    Other proteins in same PDB: d3lpla2, d3lpla3, d3lplb2, d3lplb3
    automated match to d2ieaa2
    complexed with epe, mg, po4, tdp; mutant
2. Domains for 3lq2:
  1. Domain d3lq2a1: 3lq2 A:56-470 [247496]
    Other proteins in same PDB: d3lq2a2, d3lq2a3, d3lq2b2, d3lq2b3
    automated match to d2ieaa2
    complexed with epe, mg, po4, tdp; mutant
  2. Domain d3lq2b1: 3lq2 B:56-470 [247499]
    Other proteins in same PDB: d3lq2a2, d3lq2a3, d3lq2b2, d3lq2b3
    automated match to d2ieaa2
    complexed with epe, mg, po4, tdp; mutant
3. Domains for 3lq4:
  1. Domain d3lq4a1: 3lq4 A:56-470 [247502]
    Other proteins in same PDB: d3lq4a2, d3lq4a3, d3lq4b2, d3lq4b3
    automated match to d2ieaa2
    complexed with epe, mg, po4, tdp; mutant
  2. Domain d3lq4b1: 3lq4 B:56-470 [247505]
    Other proteins in same PDB: d3lq4a2, d3lq4a3, d3lq4b2, d3lq4b3
    automated match to d2ieaa2
    complexed with epe, mg, po4, tdp; mutant

More info for Protein automated matches from c.36.1.10: TK-like PP module

Timeline for Protein automated matches from c.36.1.10: TK-like PP module:

Protein automated matches from c.36.1.10: TK-like PP module first appeared in SCOPe 2.04
Protein automated matches from c.36.1.10: TK-like PP module appears in SCOPe 2.05
Protein automated matches from c.36.1.10: TK-like PP module appears in SCOPe 2.07
Protein automated matches from c.36.1.10: TK-like PP module appears in the current release, SCOPe 2.08