SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class h: Coiled coil proteins [57942] (7 folds)
Fold h.1: Parallel coiled-coil [57943] (41 superfamilies)
this is not a true fold; includes oligomers of shorter identical helices
Superfamily h.1.15: SNARE fusion complex [58038] (2 families)
tetrameric parallel coiled coil
Family h.1.15.1: SNARE fusion complex [58039] (12 proteins)
Protein automated matches [254664] (2 species)
not a true protein

Species:

Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [255760] (1 PDB entry)
- Domains for 3b5n:
  1. Domain d3b5nc2: 3b5n C:433-499 [154848]
    Other proteins in same PDB: d3b5na2, d3b5na3, d3b5nb_, d3b5nc3, d3b5nc4, d3b5ne_, d3b5nf_, d3b5ng2, d3b5ni_, d3b5nj_
    automated match to d1urqc_
  2. Domain d3b5ng1: 3b5n G:433-499 [239155]
    Other proteins in same PDB: d3b5na2, d3b5na3, d3b5nb_, d3b5nc3, d3b5nc4, d3b5ne_, d3b5nf_, d3b5ng2, d3b5ni_, d3b5nj_
    automated match to d1urqc_
  3. Domain d3b5nk_: 3b5n K: [239156]
    Other proteins in same PDB: d3b5na2, d3b5na3, d3b5nb_, d3b5nc3, d3b5nc4, d3b5ne_, d3b5nf_, d3b5ng2, d3b5ni_, d3b5nj_
    automated match to d1urqc_
Norway rat (Rattus norvegicus) [TaxId:10116] [256060] (5 PDB entries)
1. Domain for 2n1t:
  - Domain d2n1tb_: 2n1t B: [273432]
    Other proteins in same PDB: d2n1ta_, d2n1tc_, d2n1td_, d2n1te1, d2n1te2
    automated match to d1sfcj_
2. Domains for 3rk2:
  1. Domain d3rk2b1: 3rk2 B:191-248 [249132]
    Other proteins in same PDB: d3rk2b2, d3rk2c1, d3rk2c2, d3rk2d1, d3rk2d2, d3rk2f2, d3rk2g1, d3rk2g2, d3rk2h1, d3rk2h2
    automated match to d1n7sb_
    complexed with ca
  2. Domain d3rk2f1: 3rk2 F:191-248 [249135]
    Other proteins in same PDB: d3rk2b2, d3rk2c1, d3rk2c2, d3rk2d1, d3rk2d2, d3rk2f2, d3rk2g1, d3rk2g2, d3rk2h1, d3rk2h2
    automated match to d1n7sb_
    complexed with ca
3. Domain for 5w5c:
  - Domain d5w5cb_: 5w5c B: [338407]
    Other proteins in same PDB: d5w5cc_, d5w5cd_, d5w5cf1, d5w5cf2
    automated match to d1sfcj_
    complexed with gol, mg
4. Domain for 5w5d:
  - Domain d5w5db_: 5w5d B: [338377]
    Other proteins in same PDB: d5w5dc_, d5w5dd_, d5w5df_
    automated match to d1sfcj_
    complexed with mg
5. Domains for 6wvw:
  1. Domain d6wvwa_: 6wvw A: [402766]
    Other proteins in same PDB: d6wvwc_, d6wvwd_, d6wvwe2, d6wvwg_, d6wvwh_
    automated match to d1sfce_
    complexed with ca, mpd
  2. Domain d6wvwb_: 6wvw B: [402753]
    Other proteins in same PDB: d6wvwc_, d6wvwd_, d6wvwe2, d6wvwg_, d6wvwh_
    automated match to d1sfcf_
    complexed with ca, mpd
  3. Domain d6wvwe1: 6wvw E:28-89 [402762]
    Other proteins in same PDB: d6wvwc_, d6wvwd_, d6wvwe2, d6wvwg_, d6wvwh_
    automated match to d1sfce_
    complexed with ca, mpd
  4. Domain d6wvwf_: 6wvw F: [402746]
    Other proteins in same PDB: d6wvwc_, d6wvwd_, d6wvwe2, d6wvwg_, d6wvwh_
    automated match to d1sfcf_
    complexed with ca, mpd

More info for Protein automated matches from h.1.15.1: SNARE fusion complex

Timeline for Protein automated matches from h.1.15.1: SNARE fusion complex:

Protein automated matches from h.1.15.1: SNARE fusion complex first appeared in SCOPe 2.04
Protein automated matches from h.1.15.1: SNARE fusion complex appears in SCOPe 2.07