SCOPe 2.06: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.06
Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
Fold d.96: T-fold [55619] (2 superfamilies)
beta(2)-alpha(2)-beta(2); 2 layers: alpha/beta; antiparallel sheet 1234
tunnel-shaped: its known members form wide oligomeric barrels different sizes
Superfamily d.96.1: Tetrahydrobiopterin biosynthesis enzymes-like [55620] (5 families)
bind purine or pterin in topologically similar sites between subunits
Family d.96.1.4: Urate oxidase (uricase) [55633] (2 proteins)
automatically mapped to Pfam PF01014
Protein automated matches [254656] (4 species)
not a true protein

Species:

Arthrobacter globiformis [TaxId:1665] [255720] (4 PDB entries)
1. Domains for 2yzb:
  1. Domain d2yzba1: 2yzb A:11-141 [153838]
    automated match to d2yzca1
    complexed with urc
  2. Domain d2yzba2: 2yzb A:142-297 [153839]
    automated match to d2yzca2
    complexed with urc
  3. Domain d2yzbb1: 2yzb B:11-141 [153840]
    automated match to d2yzca1
    complexed with urc
  4. Domain d2yzbb2: 2yzb B:142-297 [153841]
    automated match to d2yzca2
    complexed with urc
  5. Domain d2yzbc1: 2yzb C:11-141 [153842]
    automated match to d2yzca1
    complexed with urc
  6. Domain d2yzbc2: 2yzb C:142-297 [153843]
    automated match to d2yzca2
    complexed with urc
  7. Domain d2yzbd1: 2yzb D:11-141 [153844]
    automated match to d2yzca1
    complexed with urc
  8. Domain d2yzbd2: 2yzb D:142-297 [153845]
    automated match to d2yzca2
    complexed with urc
  9. Domain d2yzbe1: 2yzb E:11-141 [153846]
    automated match to d2yzca1
    complexed with urc
  10. Domain d2yzbe2: 2yzb E:142-296 [153847]
    automated match to d2yzca2
    complexed with urc
  11. Domain d2yzbf1: 2yzb F:11-141 [153848]
    automated match to d2yzca1
    complexed with urc
  12. Domain d2yzbf2: 2yzb F:142-297 [153849]
    automated match to d2yzca2
    complexed with urc
  13. Domain d2yzbg1: 2yzb G:11-141 [153850]
    automated match to d2yzca1
    complexed with urc
  14. Domain d2yzbg2: 2yzb G:142-297 [153851]
    automated match to d2yzca2
    complexed with urc
  15. Domain d2yzbh1: 2yzb H:11-141 [153852]
    automated match to d2yzca1
    complexed with urc
  16. Domain d2yzbh2: 2yzb H:142-297 [153853]
    automated match to d2yzca2
    complexed with urc
2. Domains for 2yzc:
  1. Domain d2yzca1: 2yzc A:11-141 [153854]
    automated match to d2yzca1
    complexed with 1al
  2. Domain d2yzca2: 2yzc A:142-297 [153855]
    automated match to d2yzca2
    complexed with 1al
  3. Domain d2yzcb1: 2yzc B:11-141 [153856]
    automated match to d2yzca1
    complexed with 1al
  4. Domain d2yzcb2: 2yzc B:142-297 [153857]
    automated match to d2yzca2
    complexed with 1al
  5. Domain d2yzcc1: 2yzc C:11-141 [153858]
    automated match to d2yzca1
    complexed with 1al
  6. Domain d2yzcc2: 2yzc C:142-297 [153859]
    automated match to d2yzca2
    complexed with 1al
  7. Domain d2yzcd1: 2yzc D:11-141 [153860]
    automated match to d2yzca1
    complexed with 1al
  8. Domain d2yzcd2: 2yzc D:142-297 [153861]
    automated match to d2yzca2
    complexed with 1al
  9. Domain d2yzce1: 2yzc E:11-141 [153862]
    automated match to d2yzce1
    complexed with 1al
  10. Domain d2yzce2: 2yzc E:142-297 [153863]
    automated match to d2yzce2
    complexed with 1al
  11. Domain d2yzcf1: 2yzc F:11-141 [153864]
    automated match to d2yzce1
    complexed with 1al
  12. Domain d2yzcf2: 2yzc F:142-297 [153865]
    automated match to d2yzce2
    complexed with 1al
  13. Domain d2yzcg1: 2yzc G:11-141 [153866]
    automated match to d2yzce1
    complexed with 1al
  14. Domain d2yzcg2: 2yzc G:142-297 [153867]
    automated match to d2yzce2
    complexed with 1al
  15. Domain d2yzch1: 2yzc H:11-141 [153868]
    automated match to d2yzce1
    complexed with 1al
  16. Domain d2yzch2: 2yzc H:142-297 [153869]
    automated match to d2yzce2
    complexed with 1al
3. Domains for 2yzd:
  1. Domain d2yzda1: 2yzd A:11-141 [153870]
    automated match to d2yzea1
    complexed with aza
  2. Domain d2yzda2: 2yzd A:142-297 [153871]
    automated match to d2yzea2
    complexed with aza
  3. Domain d2yzdb1: 2yzd B:11-141 [153872]
    automated match to d2yzea1
    complexed with aza
  4. Domain d2yzdb2: 2yzd B:142-297 [153873]
    automated match to d2yzea2
    complexed with aza
  5. Domain d2yzdc1: 2yzd C:11-141 [153874]
    automated match to d2yzea1
    complexed with aza
  6. Domain d2yzdc2: 2yzd C:142-297 [153875]
    automated match to d2yzea2
    complexed with aza
  7. Domain d2yzdd1: 2yzd D:11-141 [153876]
    automated match to d2yzea1
    complexed with aza
  8. Domain d2yzdd2: 2yzd D:142-297 [153877]
    automated match to d2yzea2
    complexed with aza
  9. Domain d2yzde1: 2yzd E:11-141 [153878]
    automated match to d2yzea1
    complexed with aza
  10. Domain d2yzde2: 2yzd E:142-297 [153879]
    automated match to d2yzea2
    complexed with aza
  11. Domain d2yzdf1: 2yzd F:11-141 [153880]
    automated match to d2yzea1
    complexed with aza
  12. Domain d2yzdf2: 2yzd F:142-297 [153881]
    automated match to d2yzea2
    complexed with aza
  13. Domain d2yzdg1: 2yzd G:11-141 [153882]
    automated match to d2yzea1
    complexed with aza
  14. Domain d2yzdg2: 2yzd G:142-297 [153883]
    automated match to d2yzea2
    complexed with aza
  15. Domain d2yzdh1: 2yzd H:11-141 [153884]
    automated match to d2yzea1
    complexed with aza
  16. Domain d2yzdh2: 2yzd H:142-297 [153885]
    automated match to d2yzea2
    complexed with aza
4. Domains for 2yze:
  1. Domain d2yzea1: 2yze A:11-141 [153886]
    automated match to d2yzea1
    complexed with nob
  2. Domain d2yzea2: 2yze A:142-297 [153887]
    automated match to d2yzea2
    complexed with nob
  3. Domain d2yzeb1: 2yze B:11-141 [153888]
    automated match to d2yzea1
    complexed with nob
  4. Domain d2yzeb2: 2yze B:142-297 [153889]
    automated match to d2yzea2
    complexed with nob
  5. Domain d2yzec1: 2yze C:11-141 [153890]
    automated match to d2yzec1
    complexed with nob
  6. Domain d2yzec2: 2yze C:142-297 [153891]
    automated match to d2yzec2
    complexed with nob
  7. Domain d2yzed1: 2yze D:11-141 [153892]
    automated match to d2yzec1
    complexed with nob
  8. Domain d2yzed2: 2yze D:142-297 [153893]
    automated match to d2yzec2
    complexed with nob
  9. Domain d2yzee1: 2yze E:11-141 [153894]
    automated match to d2yzea1
    complexed with nob
  10. Domain d2yzee2: 2yze E:142-297 [153895]
    automated match to d2yzea2
    complexed with nob
  11. Domain d2yzef1: 2yze F:11-141 [153896]
    automated match to d2yzef1
    complexed with nob
  12. Domain d2yzef2: 2yze F:142-297 [153897]
    automated match to d2yzef2
    complexed with nob
  13. Domain d2yzeg1: 2yze G:11-141 [153898]
    automated match to d2yzec1
    complexed with nob
  14. Domain d2yzeg2: 2yze G:142-297 [153899]
    automated match to d2yzec2
    complexed with nob
  15. Domain d2yzeh1: 2yze H:11-141 [153900]
    automated match to d2yzec1
    complexed with nob
  16. Domain d2yzeh2: 2yze H:142-297 [153901]
    automated match to d2yzec2
    complexed with nob
Aspergillus flavus [TaxId:5059] [260668] (5 PDB entries)
1. Domains for 1uox:
  1. Domain d1uoxa1: 1uox A:1-136 [303158]
    automated match to d4n9sa1
    complexed with aza, fcy
  2. Domain d1uoxa2: 1uox A:137-295 [303159]
    automated match to d4n9sa2
    complexed with aza, fcy
2. Domains for 4d12:
  1. Domain d4d12a1: 4d12 A:1-136 [260669]
    automated match to d4n9sa1
    complexed with mpd, urc
  2. Domain d4d12a2: 4d12 A:137-301 [260670]
    automated match to d4n9sa2
    complexed with mpd, urc
3. Domains for 4d13:
  1. Domain d4d13a1: 4d13 A:1-136 [261772]
    automated match to d4n9sa1
    complexed with iup, mpd
  2. Domain d4d13a2: 4d13 A:137-296 [261774]
    automated match to d4n9sa2
    complexed with iup, mpd
4. Domains for 4d17:
  1. Domain d4d17a1: 4d17 A:1-136 [261776]
    automated match to d4n9sa1
    complexed with iup, mpd, oxy, urc
  2. Domain d4d17a2: 4d17 A:137-296 [261777]
    automated match to d4n9sa2
    complexed with iup, mpd, oxy, urc
5. Domains for 4d19:
  1. Domain d4d19a1: 4d19 A:1-136 [261773]
    automated match to d4n9sa1
    complexed with iup, mpd, oxy, urc
  2. Domain d4d19a2: 4d19 A:137-296 [261775]
    automated match to d4n9sa2
    complexed with iup, mpd, oxy, urc
Bacillus sp. [TaxId:36824] [312567] (1 PDB entry)
- Domains for 5ayj:
  1. Domain d5ayja1: 5ayj A:7-158 [312568]
    automated match to d1j2ga1
    complexed with mua, p6g, so4; mutant
  2. Domain d5ayja2: 5ayj A:159-310 [312569]
    automated match to d1j2ga2
    complexed with mua, p6g, so4; mutant
  3. Domain d5ayjb1: 5ayj B:8-158 [312599]
    automated match to d1j2ga1
    complexed with mua, p6g, so4; mutant
  4. Domain d5ayjb2: 5ayj B:159-314 [312600]
    automated match to d1j2ga2
    complexed with mua, p6g, so4; mutant
  5. Domain d5ayjc1: 5ayj C:8-158 [312580]
    automated match to d1j2ga1
    complexed with mua, p6g, so4; mutant
  6. Domain d5ayjc2: 5ayj C:159-314 [312581]
    automated match to d1j2ga2
    complexed with mua, p6g, so4; mutant
  7. Domain d5ayjd1: 5ayj D:7-158 [312630]
    automated match to d1j2ga1
    complexed with mua, p6g, so4; mutant
  8. Domain d5ayjd2: 5ayj D:159-310 [312631]
    automated match to d1j2ga2
    complexed with mua, p6g, so4; mutant
Bacillus tb-90 [TaxId:36824] [280497] (1 PDB entry)
- Domains for 4xfp:
  1. Domain d4xfpa1: 4xfp A:8-158 [280502]
    automated match to d1j2ga1
    complexed with aza, cl, so4; mutant
  2. Domain d4xfpa2: 4xfp A:159-310 [280503]
    automated match to d1j2ga2
    complexed with aza, cl, so4; mutant
  3. Domain d4xfpb1: 4xfp B:8-158 [280500]
    automated match to d1j2ga1
    complexed with aza, cl, so4; mutant
  4. Domain d4xfpb2: 4xfp B:159-310 [280501]
    automated match to d1j2ga2
    complexed with aza, cl, so4; mutant
  5. Domain d4xfpc1: 4xfp C:8-158 [280498]
    automated match to d1j2ga1
    complexed with aza, cl, so4; mutant
  6. Domain d4xfpc2: 4xfp C:159-310 [280499]
    automated match to d1j2ga2
    complexed with aza, cl, so4; mutant
  7. Domain d4xfpd1: 4xfp D:8-158 [280504]
    automated match to d1j2ga1
    complexed with aza, cl, so4; mutant
  8. Domain d4xfpd2: 4xfp D:159-310 [280505]
    automated match to d1j2ga2
    complexed with aza, cl, so4; mutant

More info for Protein automated matches from d.96.1.4: Urate oxidase (uricase)

Timeline for Protein automated matches from d.96.1.4: Urate oxidase (uricase):

Protein automated matches from d.96.1.4: Urate oxidase (uricase) first appeared in SCOPe 2.04
Protein automated matches from d.96.1.4: Urate oxidase (uricase) appears in SCOPe 2.05
Protein automated matches from d.96.1.4: Urate oxidase (uricase) appears in SCOPe 2.07
Protein automated matches from d.96.1.4: Urate oxidase (uricase) appears in the current release, SCOPe 2.08