Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2590057Class h: Coiled coil proteins [57942] (7 folds)
  3. 2591558Fold h.3: Stalk segment of viral fusion proteins [58063] (3 superfamilies)
    core: trimeric coiled coil
  4. 2591559Superfamily h.3.1: Influenza hemagglutinin (stalk) [58064] (2 families) (S)
  5. 2592334Family h.3.1.0: automated matches [254278] (1 protein)
    not a true family
  6. 2592335Protein automated matches [254645] (24 species)
    not a true protein

Species:

  1. 2592336Influenza A virus (a/brevig mission/1/1918(h1n1)) [TaxId:88776] [341366] (4 PDB entries)
    1. Domains for 5vmc:
      1. 2592337Domain d5vmcb_: 5vmc B: [341407]
        Other proteins in same PDB: d5vmca_, d5vmcc_, d5vmce_
        automated match to d5bnyf_
        complexed with bma, gal, nag, sia; mutant
      2. 2592338Domain d5vmcd_: 5vmc D: [341390]
        Other proteins in same PDB: d5vmca_, d5vmcc_, d5vmce_
        automated match to d5bnyf_
        complexed with bma, gal, nag, sia; mutant
      3. 2592339Domain d5vmcf_: 5vmc F: [341386]
        Other proteins in same PDB: d5vmca_, d5vmcc_, d5vmce_
        automated match to d5bnyf_
        complexed with bma, gal, nag, sia; mutant
    2. Domains for 5vmf:
      1. 2592340Domain d5vmfb_: 5vmf B: [341439]
        Other proteins in same PDB: d5vmfa_, d5vmfc_, d5vmfe_
        automated match to d5bnyf_
        complexed with bma, gal, nag, sia; mutant
      2. 2592341Domain d5vmfd_: 5vmf D: [341417]
        Other proteins in same PDB: d5vmfa_, d5vmfc_, d5vmfe_
        automated match to d5bnyf_
        complexed with bma, gal, nag, sia; mutant
      3. 2592342Domain d5vmff_: 5vmf F: [341438]
        Other proteins in same PDB: d5vmfa_, d5vmfc_, d5vmfe_
        automated match to d5bnyf_
        complexed with bma, gal, nag, sia; mutant
    3. Domains for 5vmg:
      1. 2592343Domain d5vmgb_: 5vmg B: [341381]
        Other proteins in same PDB: d5vmga_, d5vmgc_, d5vmge_
        automated match to d5bnyf_
        complexed with bma, gal, nag, sia; mutant
      2. 2592344Domain d5vmgd_: 5vmg D: [341406]
        Other proteins in same PDB: d5vmga_, d5vmgc_, d5vmge_
        automated match to d5bnyf_
        complexed with bma, gal, nag, sia; mutant
      3. 2592345Domain d5vmgf_: 5vmg F: [341367]
        Other proteins in same PDB: d5vmga_, d5vmgc_, d5vmge_
        automated match to d5bnyf_
        complexed with bma, gal, nag, sia; mutant
    4. Domains for 5vmj:
      1. 2592346Domain d5vmjb_: 5vmj B: [341435]
        Other proteins in same PDB: d5vmja_, d5vmjc_, d5vmje_
        automated match to d5bnyf_
        complexed with bma, gal, nag, sia; mutant
      2. 2592347Domain d5vmjd_: 5vmj D: [341437]
        Other proteins in same PDB: d5vmja_, d5vmjc_, d5vmje_
        automated match to d5bnyf_
        complexed with bma, gal, nag, sia; mutant
      3. 2592348Domain d5vmjf_: 5vmj F: [341413]
        Other proteins in same PDB: d5vmja_, d5vmjc_, d5vmje_
        automated match to d5bnyf_
        complexed with bma, gal, nag, sia; mutant
  2. 2592349Influenza A virus (a/canine/colorado/17864/2006(h3n8)) [TaxId:867285] [258563] (5 PDB entries)
    1. Domains for 4uo5:
      1. 2592350Domain d4uo5b1: 4uo5 B:1-172 [258564]
        Other proteins in same PDB: d4uo5a_, d4uo5b2, d4uo5c_, d4uo5d2, d4uo5e_, d4uo5f2
        automated match to d4n5zb_
        complexed with nag, so4
      2. 2592351Domain d4uo5f1: 4uo5 F:1-172 [259041]
        Other proteins in same PDB: d4uo5a_, d4uo5b2, d4uo5c_, d4uo5d2, d4uo5e_, d4uo5f2
        automated match to d4n5zb_
        complexed with nag, so4
    2. Domain for 4uo6:
    3. Domains for 4uo7:
      1. 2592355Domain d4uo7b1: 4uo7 B:1-172 [267447]
        Other proteins in same PDB: d4uo7a_, d4uo7b2, d4uo7c_, d4uo7d2, d4uo7e_, d4uo7f2
        automated match to d4uo4b_
        complexed with nag, so4
      2. 2592356Domain d4uo7d1: 4uo7 D:1-172 [267449]
        Other proteins in same PDB: d4uo7a_, d4uo7b2, d4uo7c_, d4uo7d2, d4uo7e_, d4uo7f2
        automated match to d4uo4b_
        complexed with nag, so4
      3. 2592357Domain d4uo7f1: 4uo7 F:1-172 [267451]
        Other proteins in same PDB: d4uo7a_, d4uo7b2, d4uo7c_, d4uo7d2, d4uo7e_, d4uo7f2
        automated match to d4uo4b_
        complexed with nag, so4
    4. Domain for 4uo8:
    5. Domain for 4uoa:
  3. 2592358Influenza A virus (a/chicken/guangdong/s1311/2010(h6n6)) [TaxId:1454272] [275804] (5 PDB entries)
    1. Domains for 5bny:
      1. 2592359Domain d5bnyb_: 5bny B: [275809]
        Other proteins in same PDB: d5bnya_, d5bnyc_, d5bnye_
        automated match to d4d00d_
        complexed with nag
      2. 2592360Domain d5bnyd_: 5bny D: [275808]
        Other proteins in same PDB: d5bnya_, d5bnyc_, d5bnye_
        automated match to d4d00d_
        complexed with nag
      3. 2592361Domain d5bnyf_: 5bny F: [275813]
        Other proteins in same PDB: d5bnya_, d5bnyc_, d5bnye_
        automated match to d4d00d_
        complexed with nag
    2. Domains for 5bqz:
      1. 2592362Domain d5bqzb_: 5bqz B: [278015]
        Other proteins in same PDB: d5bqza_, d5bqzc_, d5bqze_
        automated match to d4d00d_
        complexed with gal, nag, sia
      2. 2592363Domain d5bqzd_: 5bqz D: [278013]
        Other proteins in same PDB: d5bqza_, d5bqzc_, d5bqze_
        automated match to d4d00d_
        complexed with gal, nag, sia
      3. 2592364Domain d5bqzf_: 5bqz F: [278023]
        Other proteins in same PDB: d5bqza_, d5bqzc_, d5bqze_
        automated match to d4d00d_
        complexed with gal, nag, sia
    3. Domain for 5gjs:
    4. Domain for 5gjt:
    5. Domain for 6e3h:
  4. 2592367Influenza A virus (a/chicken/potsdam/4705/1984(h2n2)) [TaxId:139280] [255661] (1 PDB entry)
  5. 2592377Influenza A virus (a/gyrfalcon/washington/41088-6/2014(h5n8)) [TaxId:1589663] [316757] (1 PDB entry)
  6. 2592381Influenza A virus (a/harbor seal/massachusetts/1/2011(h3n8)) [TaxId:1136533] [311450] (2 PDB entries)
    1. Domains for 4wa1:
      1. 2592382Domain d4wa1a2: 4wa1 A:330-503 [309793]
        Other proteins in same PDB: d4wa1a1, d4wa1b1, d4wa1c1, d4wa1d1, d4wa1e1, d4wa1f1
        automated match to d1ha0a2
        complexed with bma, nag
      2. 2592383Domain d4wa1b2: 4wa1 B:330-503 [309795]
        Other proteins in same PDB: d4wa1a1, d4wa1b1, d4wa1c1, d4wa1d1, d4wa1e1, d4wa1f1
        automated match to d1ha0a2
        complexed with bma, nag
      3. 2592384Domain d4wa1c2: 4wa1 C:330-503 [309797]
        Other proteins in same PDB: d4wa1a1, d4wa1b1, d4wa1c1, d4wa1d1, d4wa1e1, d4wa1f1
        automated match to d1ha0a2
        complexed with bma, nag
      4. 2592385Domain d4wa1d2: 4wa1 D:330-503 [309799]
        Other proteins in same PDB: d4wa1a1, d4wa1b1, d4wa1c1, d4wa1d1, d4wa1e1, d4wa1f1
        automated match to d1ha0a2
        complexed with bma, nag
      5. 2592386Domain d4wa1e2: 4wa1 E:330-503 [309801]
        Other proteins in same PDB: d4wa1a1, d4wa1b1, d4wa1c1, d4wa1d1, d4wa1e1, d4wa1f1
        automated match to d1ha0a2
        complexed with bma, nag
      6. 2592387Domain d4wa1f2: 4wa1 F:330-503 [309803]
        Other proteins in same PDB: d4wa1a1, d4wa1b1, d4wa1c1, d4wa1d1, d4wa1e1, d4wa1f1
        automated match to d1ha0a2
        complexed with bma, nag
    2. Domains for 4wa2:
      1. 2592388Domain d4wa2a2: 4wa2 A:330-503 [309805]
        Other proteins in same PDB: d4wa2a1, d4wa2b1, d4wa2c1, d4wa2d1, d4wa2e1, d4wa2f1
        automated match to d1ha0a2
        complexed with nag
      2. 2592389Domain d4wa2b2: 4wa2 B:330-503 [309807]
        Other proteins in same PDB: d4wa2a1, d4wa2b1, d4wa2c1, d4wa2d1, d4wa2e1, d4wa2f1
        automated match to d1ha0a2
        complexed with nag
      3. 2592390Domain d4wa2c2: 4wa2 C:330-503 [309809]
        Other proteins in same PDB: d4wa2a1, d4wa2b1, d4wa2c1, d4wa2d1, d4wa2e1, d4wa2f1
        automated match to d1ha0a2
        complexed with nag
      4. 2592391Domain d4wa2d2: 4wa2 D:330-503 [309811]
        Other proteins in same PDB: d4wa2a1, d4wa2b1, d4wa2c1, d4wa2d1, d4wa2e1, d4wa2f1
        automated match to d1ha0a2
        complexed with nag
      5. 2592392Domain d4wa2e2: 4wa2 E:330-503 [309813]
        Other proteins in same PDB: d4wa2a1, d4wa2b1, d4wa2c1, d4wa2d1, d4wa2e1, d4wa2f1
        automated match to d1ha0a2
        complexed with nag
      6. 2592393Domain d4wa2f2: 4wa2 F:330-503 [309815]
        Other proteins in same PDB: d4wa2a1, d4wa2b1, d4wa2c1, d4wa2d1, d4wa2e1, d4wa2f1
        automated match to d1ha0a2
        complexed with nag
  7. 2592394Influenza A virus (a/japan/305+/1957(h2n2)) [TaxId:382813] [255659] (2 PDB entries)
    1. Domains for 2wrd:
      1. 2592398Domain d2wrda2: 2wrd A:330-493 [244233]
        Other proteins in same PDB: d2wrda1, d2wrdb1, d2wrdc1
        automated match to d1ha0a2
      2. 2592399Domain d2wrdb2: 2wrd B:330-494 [244235]
        Other proteins in same PDB: d2wrda1, d2wrdb1, d2wrdc1
        automated match to d1ha0a2
      3. 2592400Domain d2wrdc2: 2wrd C:330-493 [244237]
        Other proteins in same PDB: d2wrda1, d2wrdb1, d2wrdc1
        automated match to d1ha0a2
    2. Domains for 2wre:
      1. 2592395Domain d2wrea2: 2wre A:330-493 [244239]
        Other proteins in same PDB: d2wrea1, d2wreb1, d2wrec1
        automated match to d1ha0a2
      2. 2592396Domain d2wreb2: 2wre B:330-494 [244241]
        Other proteins in same PDB: d2wrea1, d2wreb1, d2wrec1
        automated match to d1ha0a2
      3. 2592397Domain d2wrec2: 2wre C:330-493 [244243]
        Other proteins in same PDB: d2wrea1, d2wreb1, d2wrec1
        automated match to d1ha0a2
  8. 2592401Influenza A virus (a/shearwater/australia/2576/1979(h15n9)) [TaxId:650409] [333013] (2 PDB entries)
    1. Domains for 5tg8:
      1. 2592404Domain d5tg8b_: 5tg8 B: [333109]
        Other proteins in same PDB: d5tg8a_, d5tg8c_
        automated match to d5e30b_
        complexed with nag
      2. 2592405Domain d5tg8d_: 5tg8 D: [333014]
        Other proteins in same PDB: d5tg8a_, d5tg8c_
        automated match to d5e30b_
        complexed with nag
    2. Domains for 5tg9:
      1. 2592402Domain d5tg9b_: 5tg9 B: [333018]
        Other proteins in same PDB: d5tg9a_, d5tg9c_
        automated match to d5e30b_
        complexed with gal, nag, sia
      2. 2592403Domain d5tg9d_: 5tg9 D: [333029]
        Other proteins in same PDB: d5tg9a_, d5tg9c_
        automated match to d5e30b_
        complexed with gal, nag, sia
  9. 2592406Influenza A virus (a/solomon islands/3/2006(h1n1)) [TaxId:464623] [343308] (1 PDB entry)
  10. 2592408Influenza A virus (a/swine/ontario/01911-1/99 (h4n6)) [TaxId:137611] [337394] (1 PDB entry)
  11. 2592412Influenza A virus (strain a/duck/czechoslovakia/1956 h4n6) [TaxId:385590] [337345] (3 PDB entries)
    1. Domains for 5xl8:
      1. 2592413Domain d5xl8a2: 5xl8 A:333-499 [337358]
        Other proteins in same PDB: d5xl8a1, d5xl8b1, d5xl8c1
        automated match to d1ha0a2
        complexed with nag; mutant
      2. 2592414Domain d5xl8b2: 5xl8 B:333-499 [337429]
        Other proteins in same PDB: d5xl8a1, d5xl8b1, d5xl8c1
        automated match to d1ha0a2
        complexed with nag; mutant
      3. 2592415Domain d5xl8c2: 5xl8 C:333-499 [337346]
        Other proteins in same PDB: d5xl8a1, d5xl8b1, d5xl8c1
        automated match to d1ha0a2
        complexed with nag; mutant
    2. Domains for 5xl9:
      1. 2592418Domain d5xl9a2: 5xl9 A:333-499 [337383]
        Other proteins in same PDB: d5xl9a1, d5xl9b1, d5xl9c1
        automated match to d1ha0a2
        complexed with nag, sia; mutant
      2. 2592419Domain d5xl9b2: 5xl9 B:333-499 [337440]
        Other proteins in same PDB: d5xl9a1, d5xl9b1, d5xl9c1
        automated match to d1ha0a2
        complexed with nag, sia; mutant
      3. 2592420Domain d5xl9c2: 5xl9 C:333-499 [337371]
        Other proteins in same PDB: d5xl9a1, d5xl9b1, d5xl9c1
        automated match to d1ha0a2
        complexed with nag, sia; mutant
    3. Domains for 5xla:
      1. 2592416Domain d5xlaa2: 5xla A:329-499 [337457]
        Other proteins in same PDB: d5xlaa1, d5xlab1
        automated match to d1ha0a2
        complexed with nag, sia; mutant
      2. 2592417Domain d5xlab2: 5xla B:329-499 [337412]
        Other proteins in same PDB: d5xlaa1, d5xlab1
        automated match to d1ha0a2
        complexed with nag, sia; mutant
  12. 2592421Influenza A virus (strain a/hong kong/1/1968 h3n2) [TaxId:506350] [327398] (1 PDB entry)
  13. 2592424Influenza A virus [TaxId:1268360] [311452] (1 PDB entry)
  14. 2592426Influenza A virus [TaxId:1331560] [311453] (2 PDB entries)
    1. Domain for 4we8:
    2. Domain for 4wea:
  15. 2592429Influenza A virus [TaxId:1332244] [327811] (5 PDB entries)
    1. Domains for 5t6s:
      1. 2592430Domain d5t6sb_: 5t6s B: [327855]
        Other proteins in same PDB: d5t6sa_, d5t6sc_, d5t6se_, d5t6sg_, d5t6si_, d5t6sk_
        automated match to d4kdmb_
        complexed with 75u, bma, na, nag
      2. 2592431Domain d5t6sd_: 5t6s D: [327871]
        Other proteins in same PDB: d5t6sa_, d5t6sc_, d5t6se_, d5t6sg_, d5t6si_, d5t6sk_
        automated match to d4kdmb_
        complexed with 75u, bma, na, nag
      3. 2592432Domain d5t6sf_: 5t6s F: [327820]
        Other proteins in same PDB: d5t6sa_, d5t6sc_, d5t6se_, d5t6sg_, d5t6si_, d5t6sk_
        automated match to d4kdmb_
        complexed with 75u, bma, na, nag
      4. 2592433Domain d5t6sh_: 5t6s H: [327812]
        Other proteins in same PDB: d5t6sa_, d5t6sc_, d5t6se_, d5t6sg_, d5t6si_, d5t6sk_
        automated match to d4kdmb_
        complexed with 75u, bma, na, nag
      5. 2592434Domain d5t6sj_: 5t6s J: [327860]
        Other proteins in same PDB: d5t6sa_, d5t6sc_, d5t6se_, d5t6sg_, d5t6si_, d5t6sk_
        automated match to d4kdmb_
        complexed with 75u, bma, na, nag
      6. 2592435Domain d5t6sl_: 5t6s L: [327825]
        Other proteins in same PDB: d5t6sa_, d5t6sc_, d5t6se_, d5t6sg_, d5t6si_, d5t6sk_
        automated match to d4kdmb_
        complexed with 75u, bma, na, nag
    2. Domain for 5vjk:
    3. Domain for 5vjl:
    4. Domain for 5vjm:
    5. Domains for 6d7u:
      1. 3052683Domain d6d7ud_: 6d7u D: [352745]
        Other proteins in same PDB: d6d7ua_, d6d7uc_, d6d7ue_
        automated match to d5t6sb_
        complexed with nag
      2. 3052774Domain d6d7uf_: 6d7u F: [352836]
        Other proteins in same PDB: d6d7ua_, d6d7uc_, d6d7ue_
        automated match to d5t6sb_
        complexed with nag
      3. 3052785Domain d6d7ub_: 6d7u B: [352847]
        Other proteins in same PDB: d6d7ua_, d6d7uc_, d6d7ue_
        automated match to d5t6sb_
        complexed with nag
  16. 2592439Influenza A virus [TaxId:1454274] [275816] (1 PDB entry)
  17. 2592443Influenza A virus [TaxId:1458555] [271089] (1 PDB entry)
  18. 2592445Influenza A virus [TaxId:385624] [311458] (1 PDB entry)
  19. 2592447Influenza A virus, different strains [TaxId:11320] [255657] (7 PDB entries)
    1. Domains for 2wrb:
      1. 2592453Domain d2wrba2: 2wrb A:330-487 [244227]
        Other proteins in same PDB: d2wrba1, d2wrbb1, d2wrbc1
        automated match to d1ha0a2
        complexed with sia
      2. 2592454Domain d2wrbb2: 2wrb B:330-495 [244229]
        Other proteins in same PDB: d2wrba1, d2wrbb1, d2wrbc1
        automated match to d1ha0a2
        complexed with sia
      3. 2592455Domain d2wrbc2: 2wrb C:330-462 [244231]
        Other proteins in same PDB: d2wrba1, d2wrbb1, d2wrbc1
        automated match to d1ha0a2
        complexed with sia
    2. Domain for 4mc5:
    3. Domain for 4uo4:
    4. Domain for 4uo5:
    5. Domains for 4wsw:
      1. 2592456Domain d4wswb_: 4wsw B: [269518]
        Other proteins in same PDB: d4wswa_, d4wswc_, d4wswe_
        automated match to d4uo4b_
        complexed with nag
      2. 2592457Domain d4wswd_: 4wsw D: [269527]
        Other proteins in same PDB: d4wswa_, d4wswc_, d4wswe_
        automated match to d4uo4b_
        complexed with nag
      3. 2592458Domain d4wswf_: 4wsw F: [269529]
        Other proteins in same PDB: d4wswa_, d4wswc_, d4wswe_
        automated match to d4uo4b_
        complexed with nag
    6. Domains for 4xq5:
      1. 2592451Domain d4xq5b_: 4xq5 B: [271091]
        Other proteins in same PDB: d4xq5a_, d4xq5c_, d4xq5e_
        automated match to d4uo4b_
        complexed with nag
      2. 2592452Domain d4xq5f_: 4xq5 F: [271097]
        Other proteins in same PDB: d4xq5a_, d4xq5c_, d4xq5e_
        automated match to d4uo4b_
        complexed with nag
    7. Domains for 4xqo:
      1. 2592459Domain d4xqob_: 4xqo B: [271096]
        Other proteins in same PDB: d4xqoa_, d4xqoc_, d4xqoe_
        automated match to d4uo4b_
        complexed with gal, nag, sia
      2. 2592460Domain d4xqod_: 4xqo D: [271099]
        Other proteins in same PDB: d4xqoa_, d4xqoc_, d4xqoe_
        automated match to d4uo4b_
        complexed with gal, nag, sia
      3. 2592461Domain d4xqof_: 4xqo F: [271102]
        Other proteins in same PDB: d4xqoa_, d4xqoc_, d4xqoe_
        automated match to d4uo4b_
        complexed with gal, nag, sia
  20. 2592462Influenza virus a/anhui/1/2013 (h7n9) [TaxId:11320] [256214] (6 PDB entries)
    1. Domain for 4bsa:
    2. Domain for 4bsb:
    3. Domain for 4bsc:
    4. Domain for 4bsd:
    5. Domain for 4bse:
    6. Domain for 4bsf:
  21. 2592469Unidentified influenza virus [TaxId:11309] [315420] (1 PDB entry)
  22. 3050101Influenza a virus (a/viet nam/1203/2004(h5n1)) [TaxId:284218] [350163] (1 PDB entry)
  23. 3051776Influenza a virus [TaxId:947380] [351838] (1 PDB entry)
  24. 3058991Influenza a virus (a/chicken/taiwan/0502/2012(h5n2)) [TaxId:1490024] [359053] (1 PDB entry)

More info for Protein automated matches from h.3.1.0: automated matches

Timeline for Protein automated matches from h.3.1.0: automated matches: