Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2237529Class h: Coiled coil proteins [57942] (7 folds)
  3. 2238933Fold h.3: Stalk segment of viral fusion proteins [58063] (3 superfamilies)
    core: trimeric coiled coil
  4. 2238934Superfamily h.3.1: Influenza hemagglutinin (stalk) [58064] (2 families) (S)
  5. 2239599Family h.3.1.0: automated matches [254278] (1 protein)
    not a true family
  6. 2239600Protein automated matches [254645] (21 species)
    not a true protein

Species:

  1. 2239601Influenza a virus (a/canine/colorado/17864/2006(h3n8)) [TaxId:867285] [258565] (4 PDB entries)
    1. Domain for 4uo6:
    2. Domains for 4uo7:
      1. 2239605Domain d4uo7b1: 4uo7 B:1-172 [267447]
        Other proteins in same PDB: d4uo7a_, d4uo7b2, d4uo7c_, d4uo7d2, d4uo7e_, d4uo7f2
        automated match to d4uo4b_
        complexed with nag, so4
      2. 2239606Domain d4uo7d1: 4uo7 D:1-172 [267449]
        Other proteins in same PDB: d4uo7a_, d4uo7b2, d4uo7c_, d4uo7d2, d4uo7e_, d4uo7f2
        automated match to d4uo4b_
        complexed with nag, so4
      3. 2239607Domain d4uo7f1: 4uo7 F:1-172 [267451]
        Other proteins in same PDB: d4uo7a_, d4uo7b2, d4uo7c_, d4uo7d2, d4uo7e_, d4uo7f2
        automated match to d4uo4b_
        complexed with nag, so4
    3. Domain for 4uo8:
    4. Domain for 4uoa:
  2. 2239608Influenza a virus (a/chicken/guangdong/s1311/2010(h6n6)) [TaxId:1454272] [278011] (1 PDB entry)
  3. 2239612Influenza a virus (a/chicken/potsdam/4705/1984(h2n2)) [TaxId:139280] [255661] (1 PDB entry)
  4. 2239622Influenza a virus (a/harbor seal/massachusetts/1/2011(h3n8)) [TaxId:1136533] [311450] (2 PDB entries)
    1. Domains for 4wa1:
      1. 2239623Domain d4wa1a2: 4wa1 A:330-503 [309793]
        Other proteins in same PDB: d4wa1a1, d4wa1b1, d4wa1c1, d4wa1d1, d4wa1e1, d4wa1f1
        automated match to d1ha0a2
        complexed with nag
      2. 2239624Domain d4wa1b2: 4wa1 B:330-503 [309795]
        Other proteins in same PDB: d4wa1a1, d4wa1b1, d4wa1c1, d4wa1d1, d4wa1e1, d4wa1f1
        automated match to d1ha0a2
        complexed with nag
      3. 2239625Domain d4wa1c2: 4wa1 C:330-503 [309797]
        Other proteins in same PDB: d4wa1a1, d4wa1b1, d4wa1c1, d4wa1d1, d4wa1e1, d4wa1f1
        automated match to d1ha0a2
        complexed with nag
      4. 2239626Domain d4wa1d2: 4wa1 D:330-503 [309799]
        Other proteins in same PDB: d4wa1a1, d4wa1b1, d4wa1c1, d4wa1d1, d4wa1e1, d4wa1f1
        automated match to d1ha0a2
        complexed with nag
      5. 2239627Domain d4wa1e2: 4wa1 E:330-503 [309801]
        Other proteins in same PDB: d4wa1a1, d4wa1b1, d4wa1c1, d4wa1d1, d4wa1e1, d4wa1f1
        automated match to d1ha0a2
        complexed with nag
      6. 2239628Domain d4wa1f2: 4wa1 F:330-503 [309803]
        Other proteins in same PDB: d4wa1a1, d4wa1b1, d4wa1c1, d4wa1d1, d4wa1e1, d4wa1f1
        automated match to d1ha0a2
        complexed with nag
    2. Domains for 4wa2:
      1. 2239629Domain d4wa2a2: 4wa2 A:330-503 [309805]
        Other proteins in same PDB: d4wa2a1, d4wa2b1, d4wa2c1, d4wa2d1, d4wa2e1, d4wa2f1
        automated match to d1ha0a2
        complexed with nag
      2. 2239630Domain d4wa2b2: 4wa2 B:330-503 [309807]
        Other proteins in same PDB: d4wa2a1, d4wa2b1, d4wa2c1, d4wa2d1, d4wa2e1, d4wa2f1
        automated match to d1ha0a2
        complexed with nag
      3. 2239631Domain d4wa2c2: 4wa2 C:330-503 [309809]
        Other proteins in same PDB: d4wa2a1, d4wa2b1, d4wa2c1, d4wa2d1, d4wa2e1, d4wa2f1
        automated match to d1ha0a2
        complexed with nag
      4. 2239632Domain d4wa2d2: 4wa2 D:330-503 [309811]
        Other proteins in same PDB: d4wa2a1, d4wa2b1, d4wa2c1, d4wa2d1, d4wa2e1, d4wa2f1
        automated match to d1ha0a2
        complexed with nag
      5. 2239633Domain d4wa2e2: 4wa2 E:330-503 [309813]
        Other proteins in same PDB: d4wa2a1, d4wa2b1, d4wa2c1, d4wa2d1, d4wa2e1, d4wa2f1
        automated match to d1ha0a2
        complexed with nag
      6. 2239634Domain d4wa2f2: 4wa2 F:330-503 [309815]
        Other proteins in same PDB: d4wa2a1, d4wa2b1, d4wa2c1, d4wa2d1, d4wa2e1, d4wa2f1
        automated match to d1ha0a2
        complexed with nag
  5. 2239635Influenza a virus (a/japan/305+/1957(h2n2)) [TaxId:382813] [255659] (2 PDB entries)
    1. Domains for 2wrd:
      1. 2239639Domain d2wrda2: 2wrd A:330-493 [244233]
        Other proteins in same PDB: d2wrda1, d2wrdb1, d2wrdc1
        automated match to d1ha0a2
      2. 2239640Domain d2wrdb2: 2wrd B:330-494 [244235]
        Other proteins in same PDB: d2wrda1, d2wrdb1, d2wrdc1
        automated match to d1ha0a2
      3. 2239641Domain d2wrdc2: 2wrd C:330-493 [244237]
        Other proteins in same PDB: d2wrda1, d2wrdb1, d2wrdc1
        automated match to d1ha0a2
    2. Domains for 2wre:
      1. 2239636Domain d2wrea2: 2wre A:330-493 [244239]
        Other proteins in same PDB: d2wrea1, d2wreb1, d2wrec1
        automated match to d1ha0a2
      2. 2239637Domain d2wreb2: 2wre B:330-494 [244241]
        Other proteins in same PDB: d2wrea1, d2wreb1, d2wrec1
        automated match to d1ha0a2
      3. 2239638Domain d2wrec2: 2wre C:330-493 [244243]
        Other proteins in same PDB: d2wrea1, d2wreb1, d2wrec1
        automated match to d1ha0a2
  6. 2239642Influenza A virus [TaxId:11320] [255657] (7 PDB entries)
    1. Domains for 2wrb:
      1. 2239648Domain d2wrba2: 2wrb A:330-487 [244227]
        Other proteins in same PDB: d2wrba1, d2wrbb1, d2wrbc1
        automated match to d1ha0a2
        complexed with sia
      2. 2239649Domain d2wrbb2: 2wrb B:330-495 [244229]
        Other proteins in same PDB: d2wrba1, d2wrbb1, d2wrbc1
        automated match to d1ha0a2
        complexed with sia
      3. 2239650Domain d2wrbc2: 2wrb C:330-462 [244231]
        Other proteins in same PDB: d2wrba1, d2wrbb1, d2wrbc1
        automated match to d1ha0a2
        complexed with sia
    2. Domain for 4mc5:
    3. Domain for 4uo4:
    4. Domain for 4uo5:
    5. Domains for 4wsw:
      1. 2239651Domain d4wswb_: 4wsw B: [269518]
        Other proteins in same PDB: d4wswa_, d4wswc_, d4wswe_
        automated match to d4uo4b_
        complexed with nag
      2. 2239652Domain d4wswd_: 4wsw D: [269527]
        Other proteins in same PDB: d4wswa_, d4wswc_, d4wswe_
        automated match to d4uo4b_
        complexed with nag
      3. 2239653Domain d4wswf_: 4wsw F: [269529]
        Other proteins in same PDB: d4wswa_, d4wswc_, d4wswe_
        automated match to d4uo4b_
        complexed with nag
    6. Domains for 4xq5:
      1. 2239646Domain d4xq5b_: 4xq5 B: [271091]
        Other proteins in same PDB: d4xq5a_, d4xq5c_, d4xq5e_
        automated match to d4uo4b_
        complexed with nag
      2. 2239647Domain d4xq5f_: 4xq5 F: [271097]
        Other proteins in same PDB: d4xq5a_, d4xq5c_, d4xq5e_
        automated match to d4uo4b_
        complexed with nag
    7. Domains for 4xqo:
      1. 2239654Domain d4xqob_: 4xqo B: [271096]
        Other proteins in same PDB: d4xqoa_, d4xqoc_, d4xqoe_
        automated match to d4uo4b_
        complexed with gal, nag, sia
      2. 2239655Domain d4xqod_: 4xqo D: [271099]
        Other proteins in same PDB: d4xqoa_, d4xqoc_, d4xqoe_
        automated match to d4uo4b_
        complexed with gal, nag, sia
      3. 2239656Domain d4xqof_: 4xqo F: [271102]
        Other proteins in same PDB: d4xqoa_, d4xqoc_, d4xqoe_
        automated match to d4uo4b_
        complexed with gal, nag, sia
  7. 2239657Influenza a virus [TaxId:1268360] [311452] (1 PDB entry)
  8. 2239659Influenza a virus [TaxId:1331560] [311453] (2 PDB entries)
    1. Domain for 4we8:
    2. Domain for 4wea:
  9. 2239662Influenza a virus [TaxId:1454272] [275804] (3 PDB entries)
    1. Domains for 5bny:
      1. 2239663Domain d5bnyb_: 5bny B: [275809]
        Other proteins in same PDB: d5bnya_, d5bnyc_, d5bnye_
        automated match to d4d00d_
        complexed with nag
      2. 2239664Domain d5bnyd_: 5bny D: [275808]
        Other proteins in same PDB: d5bnya_, d5bnyc_, d5bnye_
        automated match to d4d00d_
        complexed with nag
      3. 2239665Domain d5bnyf_: 5bny F: [275813]
        Other proteins in same PDB: d5bnya_, d5bnyc_, d5bnye_
        automated match to d4d00d_
        complexed with nag
    2. Domain for 5gjs:
    3. Domain for 5gjt:
  10. 2239666Influenza a virus [TaxId:1454274] [275816] (1 PDB entry)
  11. 2239670Influenza a virus [TaxId:1458555] [271089] (1 PDB entry)
  12. 2239672Influenza a virus [TaxId:385624] [311458] (1 PDB entry)
  13. 2239674Influenza a virus [TaxId:867285] [258563] (1 PDB entry)
  14. 2239677Influenza virus a/anhui/1/2013 (h7n9) [TaxId:11320] [256214] (6 PDB entries)
    1. Domain for 4bsa:
    2. Domain for 4bsb:
    3. Domain for 4bsc:
    4. Domain for 4bsd:
    5. Domain for 4bse:
    6. Domain for 4bsf:
  15. 2272119Unidentified influenza virus [TaxId:11309] [315420] (1 PDB entry)
  16. 2273456Influenza a virus (a/gyrfalcon/washington/41088-6/2014(h5n8)) [TaxId:1589663] [316757] (1 PDB entry)
  17. 2284097Influenza a virus (strain a/hong kong/1/1968 h3n2) [TaxId:506350] [327398] (1 PDB entry)
  18. 2284510Influenza a virus [TaxId:1332244] [327811] (4 PDB entries)
    1. Domains for 5t6s:
      1. 2284511Domain d5t6sh_: 5t6s H: [327812]
        Other proteins in same PDB: d5t6sa_, d5t6sc_, d5t6se_, d5t6sg_, d5t6si_, d5t6sk_
        automated match to d4kdmb_
        complexed with 75u, bma, na, nag
      2. 2284519Domain d5t6sf_: 5t6s F: [327820]
        Other proteins in same PDB: d5t6sa_, d5t6sc_, d5t6se_, d5t6sg_, d5t6si_, d5t6sk_
        automated match to d4kdmb_
        complexed with 75u, bma, na, nag
      3. 2284524Domain d5t6sl_: 5t6s L: [327825]
        Other proteins in same PDB: d5t6sa_, d5t6sc_, d5t6se_, d5t6sg_, d5t6si_, d5t6sk_
        automated match to d4kdmb_
        complexed with 75u, bma, na, nag
      4. 2284554Domain d5t6sb_: 5t6s B: [327855]
        Other proteins in same PDB: d5t6sa_, d5t6sc_, d5t6se_, d5t6sg_, d5t6si_, d5t6sk_
        automated match to d4kdmb_
        complexed with 75u, bma, na, nag
      5. 2284559Domain d5t6sj_: 5t6s J: [327860]
        Other proteins in same PDB: d5t6sa_, d5t6sc_, d5t6se_, d5t6sg_, d5t6si_, d5t6sk_
        automated match to d4kdmb_
        complexed with 75u, bma, na, nag
      6. 2284570Domain d5t6sd_: 5t6s D: [327871]
        Other proteins in same PDB: d5t6sa_, d5t6sc_, d5t6se_, d5t6sg_, d5t6si_, d5t6sk_
        automated match to d4kdmb_
        complexed with 75u, bma, na, nag
    2. Domain for 5vjk:
    3. Domain for 5vjl:
    4. Domain for 5vjm:
  19. 2289712Influenza a virus [TaxId:650409] [333013] (2 PDB entries)
    1. Domains for 5tg8:
      1. 2289713Domain d5tg8d_: 5tg8 D: [333014]
        Other proteins in same PDB: d5tg8a_, d5tg8c_
        automated match to d5e30b_
        complexed with nag
      2. 2289808Domain d5tg8b_: 5tg8 B: [333109]
        Other proteins in same PDB: d5tg8a_, d5tg8c_
        automated match to d5e30b_
        complexed with nag
    2. Domains for 5tg9:
      1. 2289717Domain d5tg9b_: 5tg9 B: [333018]
        Other proteins in same PDB: d5tg9a_, d5tg9c_
        automated match to d5e30b_
        complexed with gal, nag, sia
      2. 2289728Domain d5tg9d_: 5tg9 D: [333029]
        Other proteins in same PDB: d5tg9a_, d5tg9c_
        automated match to d5e30b_
        complexed with gal, nag, sia
  20. 2294044Influenza a virus [TaxId:385590] [337345] (3 PDB entries)
    1. Domains for 5xl8:
      1. 2294045Domain d5xl8c2: 5xl8 C:333-499 [337346]
        Other proteins in same PDB: d5xl8a1, d5xl8b1, d5xl8c1
        automated match to d1ha0a2
        complexed with nag; mutant
      2. 2294057Domain d5xl8a2: 5xl8 A:333-499 [337358]
        Other proteins in same PDB: d5xl8a1, d5xl8b1, d5xl8c1
        automated match to d1ha0a2
        complexed with nag; mutant
      3. 2294128Domain d5xl8b2: 5xl8 B:333-499 [337429]
        Other proteins in same PDB: d5xl8a1, d5xl8b1, d5xl8c1
        automated match to d1ha0a2
        complexed with nag; mutant
    2. Domains for 5xl9:
      1. 2294070Domain d5xl9c2: 5xl9 C:333-499 [337371]
        Other proteins in same PDB: d5xl9a1, d5xl9b1, d5xl9c1
        automated match to d1ha0a2
        complexed with nag, sia; mutant
      2. 2294082Domain d5xl9a2: 5xl9 A:333-499 [337383]
        Other proteins in same PDB: d5xl9a1, d5xl9b1, d5xl9c1
        automated match to d1ha0a2
        complexed with nag, sia; mutant
      3. 2294139Domain d5xl9b2: 5xl9 B:333-499 [337440]
        Other proteins in same PDB: d5xl9a1, d5xl9b1, d5xl9c1
        automated match to d1ha0a2
        complexed with nag, sia; mutant
    3. Domains for 5xla:
      1. 2294111Domain d5xlab2: 5xla B:329-499 [337412]
        Other proteins in same PDB: d5xlaa1, d5xlab1
        automated match to d1ha0a2
        complexed with nag, sia; mutant
      2. 2294156Domain d5xlaa2: 5xla A:329-499 [337457]
        Other proteins in same PDB: d5xlaa1, d5xlab1
        automated match to d1ha0a2
        complexed with nag, sia; mutant
  21. 2294093Influenza a virus (a/swine/ontario/01911-1/99 (h4n6)) [TaxId:137611] [337394] (1 PDB entry)

More info for Protein automated matches from h.3.1.0: automated matches

Timeline for Protein automated matches from h.3.1.0: automated matches: