SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2237529Class h: Coiled coil proteins [57942] (7 folds)
  3. 2238933Fold h.3: Stalk segment of viral fusion proteins [58063] (3 superfamilies)
    core: trimeric coiled coil
  4. 2238934Superfamily h.3.1: Influenza hemagglutinin (stalk) [58064] (2 families) (S)
  5. 2239599Family h.3.1.0: automated matches [254278] (1 protein)
    not a true family
  6. 2239600Protein automated matches [254645] (18 species)
    not a true protein

Species:

  1. 2239601Influenza a virus (a/canine/colorado/17864/2006(h3n8)) [TaxId:867285] [258565] (4 PDB entries)
    1. Domain for 4uo6:
    2. Domains for 4uo7:
      1. 2239605Domain d4uo7b1: 4uo7 B:1-172 [267447]
        Other proteins in same PDB: d4uo7a_, d4uo7b2, d4uo7c_, d4uo7d2, d4uo7e_, d4uo7f2
        automated match to d4uo4b_
        complexed with nag, so4
      2. 2239606Domain d4uo7d1: 4uo7 D:1-172 [267449]
        Other proteins in same PDB: d4uo7a_, d4uo7b2, d4uo7c_, d4uo7d2, d4uo7e_, d4uo7f2
        automated match to d4uo4b_
        complexed with nag, so4
      3. 2239607Domain d4uo7f1: 4uo7 F:1-172 [267451]
        Other proteins in same PDB: d4uo7a_, d4uo7b2, d4uo7c_, d4uo7d2, d4uo7e_, d4uo7f2
        automated match to d4uo4b_
        complexed with nag, so4
    3. Domain for 4uo8:
    4. Domain for 4uoa:
  2. 2239608Influenza a virus (a/chicken/guangdong/s1311/2010(h6n6)) [TaxId:1454272] [278011] (1 PDB entry)
  3. 2239612Influenza a virus (a/chicken/potsdam/4705/1984(h2n2)) [TaxId:139280] [255661] (1 PDB entry)
  4. 2239622Influenza a virus (a/harbor seal/massachusetts/1/2011(h3n8)) [TaxId:1136533] [311450] (2 PDB entries)
    1. Domains for 4wa1:
      1. 2239623Domain d4wa1a2: 4wa1 A:330-503 [309793]
        Other proteins in same PDB: d4wa1a1, d4wa1b1, d4wa1c1, d4wa1d1, d4wa1e1, d4wa1f1
        automated match to d1ha0a2
        complexed with nag
      2. 2239624Domain d4wa1b2: 4wa1 B:330-503 [309795]
        Other proteins in same PDB: d4wa1a1, d4wa1b1, d4wa1c1, d4wa1d1, d4wa1e1, d4wa1f1
        automated match to d1ha0a2
        complexed with nag
      3. 2239625Domain d4wa1c2: 4wa1 C:330-503 [309797]
        Other proteins in same PDB: d4wa1a1, d4wa1b1, d4wa1c1, d4wa1d1, d4wa1e1, d4wa1f1
        automated match to d1ha0a2
        complexed with nag
      4. 2239626Domain d4wa1d2: 4wa1 D:330-503 [309799]
        Other proteins in same PDB: d4wa1a1, d4wa1b1, d4wa1c1, d4wa1d1, d4wa1e1, d4wa1f1
        automated match to d1ha0a2
        complexed with nag
      5. 2239627Domain d4wa1e2: 4wa1 E:330-503 [309801]
        Other proteins in same PDB: d4wa1a1, d4wa1b1, d4wa1c1, d4wa1d1, d4wa1e1, d4wa1f1
        automated match to d1ha0a2
        complexed with nag
      6. 2239628Domain d4wa1f2: 4wa1 F:330-503 [309803]
        Other proteins in same PDB: d4wa1a1, d4wa1b1, d4wa1c1, d4wa1d1, d4wa1e1, d4wa1f1
        automated match to d1ha0a2
        complexed with nag
    2. Domains for 4wa2:
      1. 2239629Domain d4wa2a2: 4wa2 A:330-503 [309805]
        Other proteins in same PDB: d4wa2a1, d4wa2b1, d4wa2c1, d4wa2d1, d4wa2e1, d4wa2f1
        automated match to d1ha0a2
        complexed with nag
      2. 2239630Domain d4wa2b2: 4wa2 B:330-503 [309807]
        Other proteins in same PDB: d4wa2a1, d4wa2b1, d4wa2c1, d4wa2d1, d4wa2e1, d4wa2f1
        automated match to d1ha0a2
        complexed with nag
      3. 2239631Domain d4wa2c2: 4wa2 C:330-503 [309809]
        Other proteins in same PDB: d4wa2a1, d4wa2b1, d4wa2c1, d4wa2d1, d4wa2e1, d4wa2f1
        automated match to d1ha0a2
        complexed with nag
      4. 2239632Domain d4wa2d2: 4wa2 D:330-503 [309811]
        Other proteins in same PDB: d4wa2a1, d4wa2b1, d4wa2c1, d4wa2d1, d4wa2e1, d4wa2f1
        automated match to d1ha0a2
        complexed with nag
      5. 2239633Domain d4wa2e2: 4wa2 E:330-503 [309813]
        Other proteins in same PDB: d4wa2a1, d4wa2b1, d4wa2c1, d4wa2d1, d4wa2e1, d4wa2f1
        automated match to d1ha0a2
        complexed with nag
      6. 2239634Domain d4wa2f2: 4wa2 F:330-503 [309815]
        Other proteins in same PDB: d4wa2a1, d4wa2b1, d4wa2c1, d4wa2d1, d4wa2e1, d4wa2f1
        automated match to d1ha0a2
        complexed with nag
  5. 2239635Influenza a virus (a/japan/305+/1957(h2n2)) [TaxId:382813] [255659] (2 PDB entries)
    1. Domains for 2wrd:
      1. 2239639Domain d2wrda2: 2wrd A:330-493 [244233]
        Other proteins in same PDB: d2wrda1, d2wrdb1, d2wrdc1
        automated match to d1ha0a2
      2. 2239640Domain d2wrdb2: 2wrd B:330-494 [244235]
        Other proteins in same PDB: d2wrda1, d2wrdb1, d2wrdc1
        automated match to d1ha0a2
      3. 2239641Domain d2wrdc2: 2wrd C:330-493 [244237]
        Other proteins in same PDB: d2wrda1, d2wrdb1, d2wrdc1
        automated match to d1ha0a2
    2. Domains for 2wre:
      1. 2239636Domain d2wrea2: 2wre A:330-493 [244239]
        Other proteins in same PDB: d2wrea1, d2wreb1, d2wrec1
        automated match to d1ha0a2
      2. 2239637Domain d2wreb2: 2wre B:330-494 [244241]
        Other proteins in same PDB: d2wrea1, d2wreb1, d2wrec1
        automated match to d1ha0a2
      3. 2239638Domain d2wrec2: 2wre C:330-493 [244243]
        Other proteins in same PDB: d2wrea1, d2wreb1, d2wrec1
        automated match to d1ha0a2
  6. 2239642Influenza A virus [TaxId:11320] [255657] (7 PDB entries)
    1. Domains for 2wrb:
      1. 2239648Domain d2wrba2: 2wrb A:330-487 [244227]
        Other proteins in same PDB: d2wrba1, d2wrbb1, d2wrbc1
        automated match to d1ha0a2
        complexed with sia
      2. 2239649Domain d2wrbb2: 2wrb B:330-495 [244229]
        Other proteins in same PDB: d2wrba1, d2wrbb1, d2wrbc1
        automated match to d1ha0a2
        complexed with sia
      3. 2239650Domain d2wrbc2: 2wrb C:330-462 [244231]
        Other proteins in same PDB: d2wrba1, d2wrbb1, d2wrbc1
        automated match to d1ha0a2
        complexed with sia
    2. Domain for 4mc5:
    3. Domain for 4uo4:
    4. Domain for 4uo5:
    5. Domains for 4wsw:
      1. 2239651Domain d4wswb_: 4wsw B: [269518]
        Other proteins in same PDB: d4wswa_, d4wswc_, d4wswe_
        automated match to d4uo4b_
        complexed with nag
      2. 2239652Domain d4wswd_: 4wsw D: [269527]
        Other proteins in same PDB: d4wswa_, d4wswc_, d4wswe_
        automated match to d4uo4b_
        complexed with nag
      3. 2239653Domain d4wswf_: 4wsw F: [269529]
        Other proteins in same PDB: d4wswa_, d4wswc_, d4wswe_
        automated match to d4uo4b_
        complexed with nag
    6. Domains for 4xq5:
      1. 2239646Domain d4xq5b_: 4xq5 B: [271091]
        Other proteins in same PDB: d4xq5a_, d4xq5c_, d4xq5e_
        automated match to d4uo4b_
        complexed with nag
      2. 2239647Domain d4xq5f_: 4xq5 F: [271097]
        Other proteins in same PDB: d4xq5a_, d4xq5c_, d4xq5e_
        automated match to d4uo4b_
        complexed with nag
    7. Domains for 4xqo:
      1. 2239654Domain d4xqob_: 4xqo B: [271096]
        Other proteins in same PDB: d4xqoa_, d4xqoc_, d4xqoe_
        automated match to d4uo4b_
        complexed with gal, nag, sia
      2. 2239655Domain d4xqod_: 4xqo D: [271099]
        Other proteins in same PDB: d4xqoa_, d4xqoc_, d4xqoe_
        automated match to d4uo4b_
        complexed with gal, nag, sia
      3. 2239656Domain d4xqof_: 4xqo F: [271102]
        Other proteins in same PDB: d4xqoa_, d4xqoc_, d4xqoe_
        automated match to d4uo4b_
        complexed with gal, nag, sia
  7. 2239657Influenza a virus [TaxId:1268360] [311452] (1 PDB entry)
  8. 2239659Influenza a virus [TaxId:1331560] [311453] (2 PDB entries)
    1. Domain for 4we8:
    2. Domain for 4wea:
  9. 2239662Influenza a virus [TaxId:1454272] [275804] (3 PDB entries)
    1. Domains for 5bny:
      1. 2239663Domain d5bnyb_: 5bny B: [275809]
        Other proteins in same PDB: d5bnya_, d5bnyc_, d5bnye_
        automated match to d4d00d_
        complexed with nag
      2. 2239664Domain d5bnyd_: 5bny D: [275808]
        Other proteins in same PDB: d5bnya_, d5bnyc_, d5bnye_
        automated match to d4d00d_
        complexed with nag
      3. 2239665Domain d5bnyf_: 5bny F: [275813]
        Other proteins in same PDB: d5bnya_, d5bnyc_, d5bnye_
        automated match to d4d00d_
        complexed with nag
    2. Domain for 5gjs:
    3. Domain for 5gjt:
  10. 2239666Influenza a virus [TaxId:1454274] [275816] (1 PDB entry)
  11. 2239670Influenza a virus [TaxId:1458555] [271089] (1 PDB entry)
  12. 2239672Influenza a virus [TaxId:385624] [311458] (1 PDB entry)
  13. 2239674Influenza a virus [TaxId:867285] [258563] (1 PDB entry)
  14. 2239677Influenza virus a/anhui/1/2013 (h7n9) [TaxId:11320] [256214] (6 PDB entries)
    1. Domain for 4bsa:
    2. Domain for 4bsb:
    3. Domain for 4bsc:
    4. Domain for 4bsd:
    5. Domain for 4bse:
    6. Domain for 4bsf:
  15. 2272119Unidentified influenza virus [TaxId:11309] [315420] (1 PDB entry)
  16. 2273456Influenza a virus (a/gyrfalcon/washington/41088-6/2014(h5n8)) [TaxId:1589663] [316757] (1 PDB entry)
  17. 2284097Influenza a virus (strain a/hong kong/1/1968 h3n2) [TaxId:506350] [327398] (1 PDB entry)
  18. 2284510Influenza a virus [TaxId:1332244] [327811] (1 PDB entry)

More info for Protein automated matches from h.3.1.0: automated matches

Timeline for Protein automated matches from h.3.1.0: automated matches: