Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2168779Fold d.41: alpha/beta-Hammerhead [54664] (5 superfamilies)
    core: beta-BETA-alpha-beta-BETA-beta-alpha; contains a beta-hammerhead motif similar to that in barrel-sandwich hybrids
  4. 2169000Superfamily d.41.3: Pyrimidine nucleoside phosphorylase C-terminal domain [54680] (2 families) (S)
  5. 2169018Family d.41.3.0: automated matches [254277] (1 protein)
    not a true family
  6. 2169019Protein automated matches [254643] (5 species)
    not a true protein

Species:

  1. 2169020Human (Homo sapiens) [TaxId:9606] [255654] (2 PDB entries)
    1. Domains for 2wk5:
      1. 2169023Domain d2wk5a3: 2wk5 A:374-480 [244154]
        Other proteins in same PDB: d2wk5a1, d2wk5a2, d2wk5b1, d2wk5b2, d2wk5c1, d2wk5c2, d2wk5d1, d2wk5d2
        automated match to d1uoua3
        complexed with gol
      2. 2169024Domain d2wk5b3: 2wk5 B:374-481 [244157]
        Other proteins in same PDB: d2wk5a1, d2wk5a2, d2wk5b1, d2wk5b2, d2wk5c1, d2wk5c2, d2wk5d1, d2wk5d2
        automated match to d1uoua3
        complexed with gol
      3. 2169025Domain d2wk5c3: 2wk5 C:374-480 [244160]
        Other proteins in same PDB: d2wk5a1, d2wk5a2, d2wk5b1, d2wk5b2, d2wk5c1, d2wk5c2, d2wk5d1, d2wk5d2
        automated match to d1uoua3
        complexed with gol
      4. 2169026Domain d2wk5d3: 2wk5 D:374-480 [244163]
        Other proteins in same PDB: d2wk5a1, d2wk5a2, d2wk5b1, d2wk5b2, d2wk5c1, d2wk5c2, d2wk5d1, d2wk5d2
        automated match to d1uoua3
        complexed with gol
    2. Domains for 2wk6:
      1. 2169021Domain d2wk6a3: 2wk6 A:374-481 [244166]
        Other proteins in same PDB: d2wk6a1, d2wk6a2, d2wk6b1, d2wk6b2
        automated match to d1uoua3
        complexed with iur
      2. 2169022Domain d2wk6b3: 2wk6 B:374-481 [244169]
        Other proteins in same PDB: d2wk6a1, d2wk6a2, d2wk6b1, d2wk6b2
        automated match to d1uoua3
        complexed with iur
  2. 2169027Salmonella typhimurium [TaxId:99287] [311467] (3 PDB entries)
    1. Domains for 4x46:
      1. 2169028Domain d4x46a3: 4x46 A:336-440 [309958]
        Other proteins in same PDB: d4x46a1, d4x46a2, d4x46b1, d4x46b2
        automated match to d4eada3
        complexed with edo, so4
      2. 2169029Domain d4x46b3: 4x46 B:336-440 [309961]
        Other proteins in same PDB: d4x46a1, d4x46a2, d4x46b1, d4x46b2
        automated match to d4eada3
        complexed with edo, so4
    2. Domains for 4yyy:
      1. 2268900Domain d4yyyb3: 4yyy B:336-440 [312206]
        Other proteins in same PDB: d4yyya1, d4yyya2, d4yyyb1, d4yyyb2
        automated match to d4x46b3
        complexed with cit, pge, uri
      2. 2268976Domain d4yyya3: 4yyy A:336-440 [312282]
        Other proteins in same PDB: d4yyya1, d4yyya2, d4yyyb1, d4yyyb2
        automated match to d4x46b3
        complexed with cit, pge, uri
    3. Domains for 5ey3:
      1. 2283578Domain d5ey3a3: 5ey3 A:336-440 [326879]
        Other proteins in same PDB: d5ey3a1, d5ey3a2, d5ey3a4, d5ey3b1, d5ey3b2
        automated match to d4x46b3
        complexed with ctn, edo, gol, so4
      2. 2283584Domain d5ey3b3: 5ey3 B:336-440 [326885]
        Other proteins in same PDB: d5ey3a1, d5ey3a2, d5ey3a4, d5ey3b1, d5ey3b2
        automated match to d4x46b3
        complexed with ctn, edo, gol, so4
  3. 2169030Staphylococcus aureus [TaxId:93062] [255860] (1 PDB entry)
  4. 2268380Salmonella enterica [TaxId:90371] [311686] (2 PDB entries)
    1. Domains for 4xr5:
      1. 2268381Domain d4xr5b3: 4xr5 B:336-440 [311687]
        Other proteins in same PDB: d4xr5a1, d4xr5a2, d4xr5b1, d4xr5b2
        automated match to d4x46b3
        complexed with cl, peg, pge
      2. 2268588Domain d4xr5a3: 4xr5 A:336-440 [311894]
        Other proteins in same PDB: d4xr5a1, d4xr5a2, d4xr5b1, d4xr5b2
        automated match to d4x46b3
        complexed with cl, peg, pge
    2. Domains for 4yek:
      1. 2268670Domain d4yekb3: 4yek B:336-440 [311976]
        Other proteins in same PDB: d4yeka1, d4yeka2, d4yekb1, d4yekb2
        automated match to d4x46b3
        complexed with edo, gol, pge, so4, thm
      2. 2268686Domain d4yeka3: 4yek A:336-440 [311992]
        Other proteins in same PDB: d4yeka1, d4yeka2, d4yekb1, d4yekb2
        automated match to d4x46b3
        complexed with edo, gol, pge, so4, thm
  5. 2283094Bacillus subtilis [TaxId:224308] [326395] (1 PDB entry)

More info for Protein automated matches from d.41.3.0: automated matches

Timeline for Protein automated matches from d.41.3.0: automated matches: