Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 2944850Fold d.41: alpha/beta-Hammerhead [54664] (5 superfamilies)
    core: beta-BETA-alpha-beta-BETA-beta-alpha; contains a beta-hammerhead motif similar to that in barrel-sandwich hybrids
  4. 2945237Superfamily d.41.3: Pyrimidine nucleoside phosphorylase C-terminal domain [54680] (2 families) (S)
  5. 2945255Family d.41.3.0: automated matches [254277] (1 protein)
    not a true family
  6. 2945256Protein automated matches [254643] (6 species)
    not a true protein

Species:

  1. 2945257Bacillus subtilis [TaxId:224308] [326395] (2 PDB entries)
    1. Domains for 5ep8:
      1. 2945260Domain d5ep8a3: 5ep8 A:331-433 [326396]
        Other proteins in same PDB: d5ep8a1, d5ep8a2, d5ep8b1, d5ep8b2
        automated match to d3h5qa3
        complexed with na, so4
      2. 2945261Domain d5ep8b3: 5ep8 B:331-433 [326399]
        Other proteins in same PDB: d5ep8a1, d5ep8a2, d5ep8b1, d5ep8b2
        automated match to d3h5qa3
        complexed with na, so4
    2. Domains for 5oln:
      1. 2945258Domain d5olna3: 5oln A:331-433 [351262]
        Other proteins in same PDB: d5olna1, d5olna2, d5olnb1, d5olnb2, d5olnb4
        automated match to d5ep8a3
        complexed with edo, imd, so4
      2. 2945259Domain d5olnb3: 5oln B:331-433 [351263]
        Other proteins in same PDB: d5olna1, d5olna2, d5olnb1, d5olnb2, d5olnb4
        automated match to d5ep8a3
        complexed with edo, imd, so4
  2. 2945262Human (Homo sapiens) [TaxId:9606] [255654] (2 PDB entries)
    1. Domains for 2wk5:
      1. 2945265Domain d2wk5a3: 2wk5 A:374-480 [244154]
        Other proteins in same PDB: d2wk5a1, d2wk5a2, d2wk5b1, d2wk5b2, d2wk5c1, d2wk5c2, d2wk5d1, d2wk5d2
        automated match to d1uoua3
        complexed with gol
      2. 2945266Domain d2wk5b3: 2wk5 B:374-481 [244157]
        Other proteins in same PDB: d2wk5a1, d2wk5a2, d2wk5b1, d2wk5b2, d2wk5c1, d2wk5c2, d2wk5d1, d2wk5d2
        automated match to d1uoua3
        complexed with gol
      3. 2945267Domain d2wk5c3: 2wk5 C:374-480 [244160]
        Other proteins in same PDB: d2wk5a1, d2wk5a2, d2wk5b1, d2wk5b2, d2wk5c1, d2wk5c2, d2wk5d1, d2wk5d2
        automated match to d1uoua3
        complexed with gol
      4. 2945268Domain d2wk5d3: 2wk5 D:374-480 [244163]
        Other proteins in same PDB: d2wk5a1, d2wk5a2, d2wk5b1, d2wk5b2, d2wk5c1, d2wk5c2, d2wk5d1, d2wk5d2
        automated match to d1uoua3
        complexed with gol
    2. Domains for 2wk6:
      1. 2945263Domain d2wk6a3: 2wk6 A:374-481 [244166]
        Other proteins in same PDB: d2wk6a1, d2wk6a2, d2wk6b1, d2wk6b2
        automated match to d1uoua3
        complexed with iur
      2. 2945264Domain d2wk6b3: 2wk6 B:374-481 [244169]
        Other proteins in same PDB: d2wk6a1, d2wk6a2, d2wk6b1, d2wk6b2
        automated match to d1uoua3
        complexed with iur
  3. 2945269Salmonella enterica [TaxId:90371] [311686] (2 PDB entries)
    1. Domains for 4xr5:
      1. 2945270Domain d4xr5a3: 4xr5 A:336-440 [311894]
        Other proteins in same PDB: d4xr5a1, d4xr5a2, d4xr5b1, d4xr5b2
        automated match to d4x46b3
        complexed with cl, peg, pge
      2. 2945271Domain d4xr5b3: 4xr5 B:336-440 [311687]
        Other proteins in same PDB: d4xr5a1, d4xr5a2, d4xr5b1, d4xr5b2
        automated match to d4x46b3
        complexed with cl, peg, pge
    2. Domains for 4yek:
      1. 2945272Domain d4yeka3: 4yek A:336-440 [311992]
        Other proteins in same PDB: d4yeka1, d4yeka2, d4yekb1, d4yekb2
        automated match to d4x46b3
        complexed with edo, gol, pge, so4, thm
      2. 2945273Domain d4yekb3: 4yek B:336-440 [311976]
        Other proteins in same PDB: d4yeka1, d4yeka2, d4yekb1, d4yekb2
        automated match to d4x46b3
        complexed with edo, gol, pge, so4, thm
  4. 2945274Salmonella typhimurium [TaxId:99287] [311467] (3 PDB entries)
    1. Domains for 4x46:
      1. 2945277Domain d4x46a3: 4x46 A:336-440 [309958]
        Other proteins in same PDB: d4x46a1, d4x46a2, d4x46b1, d4x46b2
        automated match to d4eada3
        complexed with edo, so4
      2. 2945278Domain d4x46b3: 4x46 B:336-440 [309961]
        Other proteins in same PDB: d4x46a1, d4x46a2, d4x46b1, d4x46b2
        automated match to d4eada3
        complexed with edo, so4
    2. Domains for 4yyy:
      1. 2945279Domain d4yyya3: 4yyy A:336-440 [312282]
        Other proteins in same PDB: d4yyya1, d4yyya2, d4yyyb1, d4yyyb2
        automated match to d4x46b3
        complexed with cit, pge, uri
      2. 2945280Domain d4yyyb3: 4yyy B:336-440 [312206]
        Other proteins in same PDB: d4yyya1, d4yyya2, d4yyyb1, d4yyyb2
        automated match to d4x46b3
        complexed with cit, pge, uri
    3. Domains for 5ey3:
      1. 2945275Domain d5ey3a3: 5ey3 A:336-440 [326879]
        Other proteins in same PDB: d5ey3a1, d5ey3a2, d5ey3a4, d5ey3b1, d5ey3b2
        automated match to d4x46b3
        complexed with ctn, edo, gol, so4
      2. 2945276Domain d5ey3b3: 5ey3 B:336-440 [326885]
        Other proteins in same PDB: d5ey3a1, d5ey3a2, d5ey3a4, d5ey3b1, d5ey3b2
        automated match to d4x46b3
        complexed with ctn, edo, gol, so4
  5. 2945281Staphylococcus aureus [TaxId:93062] [255860] (1 PDB entry)
  6. 3085828Parageobacillus thermoglucosidasius [TaxId:1426] [422145] (1 PDB entry)

More info for Protein automated matches from d.41.3.0: automated matches

Timeline for Protein automated matches from d.41.3.0: automated matches: