SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2168779Fold d.41: alpha/beta-Hammerhead [54664] (5 superfamilies)
    core: beta-BETA-alpha-beta-BETA-beta-alpha; contains a beta-hammerhead motif similar to that in barrel-sandwich hybrids
  4. 2169000Superfamily d.41.3: Pyrimidine nucleoside phosphorylase C-terminal domain [54680] (2 families) (S)
  5. 2169018Family d.41.3.0: automated matches [254277] (1 protein)
    not a true family
  6. 2169019Protein automated matches [254643] (5 species)
    not a true protein

Species:

  1. 2169020Human (Homo sapiens) [TaxId:9606] [255654] (2 PDB entries)
    1. Domains for 2wk5:
      1. 2169023Domain d2wk5a3: 2wk5 A:374-480 [244154]
        Other proteins in same PDB: d2wk5a1, d2wk5a2, d2wk5b1, d2wk5b2, d2wk5c1, d2wk5c2, d2wk5d1, d2wk5d2
        automated match to d1uoua3
        complexed with gol
      2. 2169024Domain d2wk5b3: 2wk5 B:374-481 [244157]
        Other proteins in same PDB: d2wk5a1, d2wk5a2, d2wk5b1, d2wk5b2, d2wk5c1, d2wk5c2, d2wk5d1, d2wk5d2
        automated match to d1uoua3
        complexed with gol
      3. 2169025Domain d2wk5c3: 2wk5 C:374-480 [244160]
        Other proteins in same PDB: d2wk5a1, d2wk5a2, d2wk5b1, d2wk5b2, d2wk5c1, d2wk5c2, d2wk5d1, d2wk5d2
        automated match to d1uoua3
        complexed with gol
      4. 2169026Domain d2wk5d3: 2wk5 D:374-480 [244163]
        Other proteins in same PDB: d2wk5a1, d2wk5a2, d2wk5b1, d2wk5b2, d2wk5c1, d2wk5c2, d2wk5d1, d2wk5d2
        automated match to d1uoua3
        complexed with gol
    2. Domains for 2wk6:
      1. 2169021Domain d2wk6a3: 2wk6 A:374-481 [244166]
        Other proteins in same PDB: d2wk6a1, d2wk6a2, d2wk6b1, d2wk6b2
        automated match to d1uoua3
        complexed with iur
      2. 2169022Domain d2wk6b3: 2wk6 B:374-481 [244169]
        Other proteins in same PDB: d2wk6a1, d2wk6a2, d2wk6b1, d2wk6b2
        automated match to d1uoua3
        complexed with iur
  2. 2169027Salmonella typhimurium [TaxId:99287] [311467] (3 PDB entries)
    1. Domains for 4x46:
      1. 2169028Domain d4x46a3: 4x46 A:336-440 [309958]
        Other proteins in same PDB: d4x46a1, d4x46a2, d4x46b1, d4x46b2
        automated match to d4eada3
        complexed with edo, so4
      2. 2169029Domain d4x46b3: 4x46 B:336-440 [309961]
        Other proteins in same PDB: d4x46a1, d4x46a2, d4x46b1, d4x46b2
        automated match to d4eada3
        complexed with edo, so4
    2. Domains for 4yyy:
      1. 2268900Domain d4yyyb3: 4yyy B:336-440 [312206]
        Other proteins in same PDB: d4yyya1, d4yyya2, d4yyyb1, d4yyyb2
        automated match to d4x46b3
        complexed with cit, pge, uri
      2. 2268976Domain d4yyya3: 4yyy A:336-440 [312282]
        Other proteins in same PDB: d4yyya1, d4yyya2, d4yyyb1, d4yyyb2
        automated match to d4x46b3
        complexed with cit, pge, uri
    3. Domains for 5ey3:
      1. 2283578Domain d5ey3a3: 5ey3 A:336-440 [326879]
        Other proteins in same PDB: d5ey3a1, d5ey3a2, d5ey3a4, d5ey3b1, d5ey3b2
        automated match to d4x46b3
        complexed with ctn, edo, gol, so4
      2. 2283584Domain d5ey3b3: 5ey3 B:336-440 [326885]
        Other proteins in same PDB: d5ey3a1, d5ey3a2, d5ey3a4, d5ey3b1, d5ey3b2
        automated match to d4x46b3
        complexed with ctn, edo, gol, so4
  3. 2169030Staphylococcus aureus [TaxId:93062] [255860] (1 PDB entry)
  4. 2268380Salmonella enterica [TaxId:90371] [311686] (2 PDB entries)
    1. Domains for 4xr5:
      1. 2268381Domain d4xr5b3: 4xr5 B:336-440 [311687]
        Other proteins in same PDB: d4xr5a1, d4xr5a2, d4xr5b1, d4xr5b2
        automated match to d4x46b3
        complexed with cl, peg, pge
      2. 2268588Domain d4xr5a3: 4xr5 A:336-440 [311894]
        Other proteins in same PDB: d4xr5a1, d4xr5a2, d4xr5b1, d4xr5b2
        automated match to d4x46b3
        complexed with cl, peg, pge
    2. Domains for 4yek:
      1. 2268670Domain d4yekb3: 4yek B:336-440 [311976]
        Other proteins in same PDB: d4yeka1, d4yeka2, d4yekb1, d4yekb2
        automated match to d4x46b3
        complexed with edo, gol, pge, so4, thm
      2. 2268686Domain d4yeka3: 4yek A:336-440 [311992]
        Other proteins in same PDB: d4yeka1, d4yeka2, d4yekb1, d4yekb2
        automated match to d4x46b3
        complexed with edo, gol, pge, so4, thm
  5. 2283094Bacillus subtilis [TaxId:224308] [326395] (1 PDB entry)

More info for Protein automated matches from d.41.3.0: automated matches

Timeline for Protein automated matches from d.41.3.0: automated matches: