SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1997771Fold a.46: Methionine synthase domain-like [47643] (3 superfamilies)
    4 helices; bundle, left-handed twist; right-handed superhelix
  4. 1997782Superfamily a.46.2: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain [47648] (2 families) (S)
    automatically mapped to Pfam PF02885
  5. 1997842Family a.46.2.0: automated matches [254276] (1 protein)
    not a true family
  6. 1997843Protein automated matches [254641] (5 species)
    not a true protein

Species:

  1. 1997844Human (Homo sapiens) [TaxId:9606] [255652] (2 PDB entries)
    1. Domains for 2wk5:
      1. 1997847Domain d2wk5a1: 2wk5 A:32-100 [244152]
        Other proteins in same PDB: d2wk5a2, d2wk5a3, d2wk5b2, d2wk5b3, d2wk5c2, d2wk5c3, d2wk5d2, d2wk5d3
        automated match to d1uoua1
        complexed with gol
      2. 1997848Domain d2wk5b1: 2wk5 B:32-100 [244155]
        Other proteins in same PDB: d2wk5a2, d2wk5a3, d2wk5b2, d2wk5b3, d2wk5c2, d2wk5c3, d2wk5d2, d2wk5d3
        automated match to d1uoua1
        complexed with gol
      3. 1997849Domain d2wk5c1: 2wk5 C:33-100 [244158]
        Other proteins in same PDB: d2wk5a2, d2wk5a3, d2wk5b2, d2wk5b3, d2wk5c2, d2wk5c3, d2wk5d2, d2wk5d3
        automated match to d1uoua1
        complexed with gol
      4. 1997850Domain d2wk5d1: 2wk5 D:34-100 [244161]
        Other proteins in same PDB: d2wk5a2, d2wk5a3, d2wk5b2, d2wk5b3, d2wk5c2, d2wk5c3, d2wk5d2, d2wk5d3
        automated match to d1uoua1
        complexed with gol
    2. Domains for 2wk6:
      1. 1997845Domain d2wk6a1: 2wk6 A:35-100 [244164]
        Other proteins in same PDB: d2wk6a2, d2wk6a3, d2wk6b2, d2wk6b3
        automated match to d1uoua1
        complexed with iur
      2. 1997846Domain d2wk6b1: 2wk6 B:35-100 [244167]
        Other proteins in same PDB: d2wk6a2, d2wk6a3, d2wk6b2, d2wk6b3
        automated match to d1uoua1
        complexed with iur
  2. 1997851Salmonella typhimurium [TaxId:99287] [311465] (3 PDB entries)
    1. Domains for 4x46:
      1. 1997852Domain d4x46a1: 4x46 A:1-70 [309956]
        Other proteins in same PDB: d4x46a2, d4x46a3, d4x46b2, d4x46b3
        automated match to d4eada1
        complexed with edo, so4
      2. 1997853Domain d4x46b1: 4x46 B:1-70 [309959]
        Other proteins in same PDB: d4x46a2, d4x46a3, d4x46b2, d4x46b3
        automated match to d4eada1
        complexed with edo, so4
    2. Domains for 4yyy:
      1. 2268898Domain d4yyyb1: 4yyy B:1-70 [312204]
        Other proteins in same PDB: d4yyya2, d4yyya3, d4yyyb2, d4yyyb3
        automated match to d4x46b1
        complexed with cit, pge, uri
      2. 2268974Domain d4yyya1: 4yyy A:1-70 [312280]
        Other proteins in same PDB: d4yyya2, d4yyya3, d4yyyb2, d4yyyb3
        automated match to d4x46b1
        complexed with cit, pge, uri
    3. Domains for 5ey3:
      1. 2283576Domain d5ey3a1: 5ey3 A:1-70 [326877]
        Other proteins in same PDB: d5ey3a2, d5ey3a3, d5ey3a4, d5ey3b2, d5ey3b3
        automated match to d4x46b1
        complexed with ctn, edo, gol, so4
      2. 2283582Domain d5ey3b1: 5ey3 B:1-70 [326883]
        Other proteins in same PDB: d5ey3a2, d5ey3a3, d5ey3a4, d5ey3b2, d5ey3b3
        automated match to d4x46b1
        complexed with ctn, edo, gol, so4
  3. 1997854Staphylococcus aureus [TaxId:93062] [255858] (1 PDB entry)
  4. 2268376Salmonella enterica [TaxId:90371] [311682] (2 PDB entries)
    1. Domains for 4xr5:
      1. 2268377Domain d4xr5b1: 4xr5 B:1-70 [311683]
        Other proteins in same PDB: d4xr5a2, d4xr5a3, d4xr5b2, d4xr5b3
        automated match to d4x46b1
        complexed with cl, peg, pge
      2. 2268586Domain d4xr5a1: 4xr5 A:1-70 [311892]
        Other proteins in same PDB: d4xr5a2, d4xr5a3, d4xr5b2, d4xr5b3
        automated match to d4x46b1
        complexed with cl, peg, pge
    2. Domains for 4yek:
      1. 2268668Domain d4yekb1: 4yek B:1-70 [311974]
        Other proteins in same PDB: d4yeka2, d4yeka3, d4yekb2, d4yekb3
        automated match to d4x46b1
        complexed with edo, gol, pge, so4, thm
      2. 2268684Domain d4yeka1: 4yek A:1-70 [311990]
        Other proteins in same PDB: d4yeka2, d4yeka3, d4yekb2, d4yekb3
        automated match to d4x46b1
        complexed with edo, gol, pge, so4, thm
  5. 2283090Bacillus subtilis [TaxId:224308] [326391] (1 PDB entry)

More info for Protein automated matches from a.46.2.0: automated matches

Timeline for Protein automated matches from a.46.2.0: automated matches: