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Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2193346Fold d.130: S-adenosylmethionine synthetase [55972] (1 superfamily)
    duplication: consists of 3 similar intertwined domains
    structural repeat: beta-alpha-beta(2)-alpha-beta; two layers, alpha/beta
  4. 2193347Superfamily d.130.1: S-adenosylmethionine synthetase [55973] (2 families) (S)
  5. 2193452Family d.130.1.0: automated matches [254267] (1 protein)
    not a true family
  6. 2193453Protein automated matches [254617] (10 species)
    not a true protein

Species:

  1. 2193454Burkholderia pseudomallei [TaxId:28450] [255893] (1 PDB entry)
  2. 2193466Campylobacter jejuni [TaxId:195099] [256355] (1 PDB entry)
  3. 2193473Cryptosporidium hominis [TaxId:237895] [256376] (1 PDB entry)
  4. 2193477Entamoeba (Entamoeba histolytica) [TaxId:5759] [256087] (1 PDB entry)
  5. 2193490Human (Homo sapiens) [TaxId:9606] [255522] (5 PDB entries)
    1. Domains for 2obv:
      1. 2193491Domain d2obva1: 2obv A:16-125 [243311]
        Other proteins in same PDB: d2obva4
        automated match to d2p02a1
        complexed with na, pg4, sam
      2. 2193492Domain d2obva2: 2obv A:126-251 [243312]
        Other proteins in same PDB: d2obva4
        automated match to d2p02a2
        complexed with na, pg4, sam
      3. 2193493Domain d2obva3: 2obv A:252-395 [243313]
        Other proteins in same PDB: d2obva4
        automated match to d2p02a3
        complexed with na, pg4, sam
    2. Domains for 4ndn:
      1. 2193494Domain d4ndna1: 4ndn A:15-115 [259828]
        Other proteins in same PDB: d4ndne_, d4ndnf_
        automated match to d2obva1
        complexed with edo, mg, ppk, sam
      2. 2193495Domain d4ndna2: 4ndn A:135-251 [259829]
        Other proteins in same PDB: d4ndne_, d4ndnf_
        automated match to d2obva2
        complexed with edo, mg, ppk, sam
      3. 2193496Domain d4ndna3: 4ndn A:252-395 [259830]
        Other proteins in same PDB: d4ndne_, d4ndnf_
        automated match to d2obva3
        complexed with edo, mg, ppk, sam
      4. 2193497Domain d4ndnb1: 4ndn B:13-125 [263123]
        Other proteins in same PDB: d4ndne_, d4ndnf_
        automated match to d2obva1
        complexed with edo, mg, ppk, sam
      5. 2193498Domain d4ndnb2: 4ndn B:126-251 [263124]
        Other proteins in same PDB: d4ndne_, d4ndnf_
        automated match to d2obva2
        complexed with edo, mg, ppk, sam
      6. 2193499Domain d4ndnb3: 4ndn B:252-395 [263125]
        Other proteins in same PDB: d4ndne_, d4ndnf_
        automated match to d2obva3
        complexed with edo, mg, ppk, sam
      7. 2193500Domain d4ndnc1: 4ndn C:15-113 [263126]
        Other proteins in same PDB: d4ndne_, d4ndnf_
        automated match to d2obva1
        complexed with edo, mg, ppk, sam
      8. 2193501Domain d4ndnc2: 4ndn C:135-251 [263127]
        Other proteins in same PDB: d4ndne_, d4ndnf_
        automated match to d2obva2
        complexed with edo, mg, ppk, sam
      9. 2193502Domain d4ndnc3: 4ndn C:252-395 [263128]
        Other proteins in same PDB: d4ndne_, d4ndnf_
        automated match to d2obva3
        complexed with edo, mg, ppk, sam
      10. 2193503Domain d4ndnd1: 4ndn D:14-125 [257984]
        Other proteins in same PDB: d4ndne_, d4ndnf_
        automated match to d2obva1
        complexed with edo, mg, ppk, sam
      11. 2193504Domain d4ndnd2: 4ndn D:126-251 [257985]
        Other proteins in same PDB: d4ndne_, d4ndnf_
        automated match to d2obva2
        complexed with edo, mg, ppk, sam
      12. 2193505Domain d4ndnd3: 4ndn D:252-395 [257986]
        Other proteins in same PDB: d4ndne_, d4ndnf_
        automated match to d2obva3
        complexed with edo, mg, ppk, sam
    3. Domains for 5a19:
      1. 2269136Domain d5a19a1: 5a19 A:16-115 [312442]
        automated match to d2p02a1
        complexed with edo, k, mg, peg, pg4, ppk
      2. 2269137Domain d5a19a2: 5a19 A:127-251 [312443]
        automated match to d2p02a2
        complexed with edo, k, mg, peg, pg4, ppk
      3. 2269138Domain d5a19a3: 5a19 A:252-395 [312444]
        automated match to d2p02a3
        complexed with edo, k, mg, peg, pg4, ppk
    4. Domains for 5a1g:
      1. 2269755Domain d5a1ga1: 5a1g A:16-125 [313060]
        automated match to d2p02a1
        complexed with imd, k, mg, mpd, ppk, s7m
      2. 2269756Domain d5a1ga2: 5a1g A:126-251 [313061]
        automated match to d2p02a2
        complexed with imd, k, mg, mpd, ppk, s7m
      3. 2269757Domain d5a1ga3: 5a1g A:252-395 [313062]
        automated match to d2p02a3
        complexed with imd, k, mg, mpd, ppk, s7m
    5. Domains for 5a1i:
      1. 2269762Domain d5a1ia1: 5a1i A:15-125 [313067]
        automated match to d2p02a1
        complexed with adn, edo, k, met, mg, peg, pg4, ppk, sam
      2. 2269763Domain d5a1ia2: 5a1i A:126-251 [313068]
        automated match to d2p02a2
        complexed with adn, edo, k, met, mg, peg, pg4, ppk, sam
      3. 2269764Domain d5a1ia3: 5a1i A:252-395 [313069]
        automated match to d2p02a3
        complexed with adn, edo, k, met, mg, peg, pg4, ppk, sam
  6. 2193506Mycobacterium avium [TaxId:243243] [256078] (1 PDB entry)
  7. 2193513Mycobacterium marinum [TaxId:216594] [256066] (1 PDB entry)
  8. 2193520Mycobacterium tuberculosis [TaxId:1773] [256098] (1 PDB entry)
  9. 2280155Neisseria gonorrhoeae [TaxId:242231] [323456] (2 PDB entries)
    1. Domains for 5t8s:
      1. 2280164Domain d5t8sb1: 5t8s B:2-101 [323465]
        automated match to d1mxaa1
        complexed with 3po, amp, mg, po4, pop, sam
      2. 2280165Domain d5t8sb2: 5t8s B:114-236 [323466]
        automated match to d1rg9a2
        complexed with 3po, amp, mg, po4, pop, sam
      3. 2280166Domain d5t8sb3: 5t8s B:237-389 [323467]
        automated match to d1mxaa3
        complexed with 3po, amp, mg, po4, pop, sam
      4. 2280195Domain d5t8sa1: 5t8s A:2-103 [323496]
        automated match to d1mxaa1
        complexed with 3po, amp, mg, po4, pop, sam
      5. 2280196Domain d5t8sa2: 5t8s A:104-236 [323497]
        automated match to d1rg9a2
        complexed with 3po, amp, mg, po4, pop, sam
      6. 2280197Domain d5t8sa3: 5t8s A:237-389 [323498]
        automated match to d1mxaa3
        complexed with 3po, amp, mg, po4, pop, sam
    2. Domains for 5t8t:
      1. 2280156Domain d5t8ta1: 5t8t A:2-104 [323457]
        automated match to d1mxaa1
        complexed with amp, mg
      2. 2280157Domain d5t8ta2: 5t8t A:114-236 [323458]
        automated match to d1rg9a2
        complexed with amp, mg
      3. 2280158Domain d5t8ta3: 5t8t A:237-389 [323459]
        automated match to d1mxaa3
        complexed with amp, mg
      4. 2280180Domain d5t8tb1: 5t8t B:2-101 [323481]
        automated match to d1mxaa1
        complexed with amp, mg
      5. 2280181Domain d5t8tb2: 5t8t B:114-236 [323482]
        automated match to d1rg9a2
        complexed with amp, mg
      6. 2280182Domain d5t8tb3: 5t8t B:237-388 [323483]
        automated match to d1mxaa3
        complexed with amp, mg
  10. 2285161Thermus thermophilus [TaxId:262724] [328462] (1 PDB entry)

More info for Protein automated matches from d.130.1.0: automated matches

Timeline for Protein automated matches from d.130.1.0: automated matches: