Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2590057Class h: Coiled coil proteins [57942] (7 folds)
  3. 2590058Fold h.1: Parallel coiled-coil [57943] (41 superfamilies)
    this is not a true fold; includes oligomers of shorter identical helices
  4. 2590957Superfamily h.1.13: Rotavirus nonstructural proteins [58030] (2 families) (S)
    not a true superfamily
  5. 2590958Family h.1.13.1: NSP4 oligomerization domain [58031] (2 proteins)
  6. 2590965Protein automated matches [254616] (6 species)
    not a true protein

Species:

  1. 2590966Human rotavirus g4 [TaxId:10960] [255969] (1 PDB entry)
  2. 2590977Rotavirus a [TaxId:10923] [255515] (1 PDB entry)
  3. 2590980Rotavirus a [TaxId:12578] [255514] (1 PDB entry)
  4. 2590985Simian rotavirus a/sa11 [TaxId:10923] [260113] (2 PDB entries)
    1. Domains for 4wb4:
      1. 2590991Domain d4wb4a_: 4wb4 A: [260117]
        automated match to d2o1ja_
        complexed with ca
      2. 2590992Domain d4wb4b_: 4wb4 B: [260999]
        automated match to d2o1ja_
        complexed with ca
    2. Domains for 4wba:
      1. 2590986Domain d4wbaa_: 4wba A: [260993]
        automated match to d2o1ja_
        complexed with gol, po4; mutant
      2. 2590987Domain d4wbab_: 4wba B: [260114]
        automated match to d2o1ja_
        complexed with gol, po4; mutant
      3. 2590988Domain d4wbac_: 4wba C: [260998]
        automated match to d2o1ja_
        complexed with gol, po4; mutant
      4. 2590989Domain d4wbad_: 4wba D: [260996]
        automated match to d2o1ja_
        complexed with gol, po4; mutant
      5. 2590990Domain d4wbae_: 4wba E: [260997]
        automated match to d2o1ja_
        complexed with gol, po4; mutant
  5. 3048590Bovine rotavirus g10 [TaxId:195477] [348652] (3 PDB entries)
    1. Domains for 5y2h:
      1. 3048603Domain d5y2hb_: 5y2h B: [348665]
        automated match to d3miwc_
      2. 3048606Domain d5y2ha_: 5y2h A: [348668]
        automated match to d3miwc_
      3. 3048653Domain d5y2hc_: 5y2h C: [348715]
        automated match to d3miwc_
      4. 3048731Domain d5y2hd_: 5y2h D: [348793]
        automated match to d3miwc_
    2. Domains for 5y2j:
      1. 3048591Domain d5y2ja_: 5y2j A: [348653]
        Other proteins in same PDB: d5y2jc2, d5y2jd2
        automated match to d3miwc_
        complexed with edo, ni
      2. 3048595Domain d5y2jc1: 5y2j C:95-132 [348657]
        Other proteins in same PDB: d5y2jc2, d5y2jd2
        automated match to d3miwc_
        complexed with edo, ni
      3. 3048607Domain d5y2jd1: 5y2j D:95-137 [348669]
        Other proteins in same PDB: d5y2jc2, d5y2jd2
        automated match to d3miwc_
        complexed with edo, ni
      4. 3048638Domain d5y2jb_: 5y2j B: [348700]
        Other proteins in same PDB: d5y2jc2, d5y2jd2
        automated match to d3miwc_
        complexed with edo, ni
    3. Domains for 5y9r:
      1. 3057063Domain d5y9rd_: 5y9r D: [357125]
        Other proteins in same PDB: d5y9rc2
        automated match to d3miwd_
        complexed with cd, edo, ni
      2. 3057079Domain d5y9rc1: 5y9r C:95-133 [357141]
        Other proteins in same PDB: d5y9rc2
        automated match to d3miwd_
        complexed with cd, edo, ni
      3. 3057153Domain d5y9ra_: 5y9r A: [357215]
        Other proteins in same PDB: d5y9rc2
        automated match to d3miwd_
        complexed with cd, edo, ni
      4. 3057175Domain d5y9rb_: 5y9r B: [357237]
        Other proteins in same PDB: d5y9rc2
        automated match to d3miwd_
        complexed with cd, edo, ni
  6. 3048599Rotavirus a (strain rva/cow/united states/ncdv-lincoln/1969/g6p6[1]) [TaxId:36439] [348661] (1 PDB entry)

More info for Protein automated matches from h.1.13.1: NSP4 oligomerization domain

Timeline for Protein automated matches from h.1.13.1: NSP4 oligomerization domain: