SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2229111Class g: Small proteins [56992] (94 folds)
  3. 2229389Fold g.3: Knottins (small inhibitors, toxins, lectins) [57015] (19 superfamilies)
    disulfide-bound fold; contains beta-hairpin with two adjacent disulfides
  4. 2229390Superfamily g.3.1: Plant lectins/antimicrobial peptides [57016] (3 families) (S)
  5. 2229567Family g.3.1.0: automated matches [254258] (1 protein)
    not a true family
  6. 2229568Protein automated matches [254597] (3 species)
    not a true protein

Species:

  1. 2229569Triticum kiharae [TaxId:376535] [255421] (1 PDB entry)
  2. 2229571Wheat (Triticum aestivum) [TaxId:4565] [255677] (2 PDB entries)
    1. Domains for 2uwz:
      1. 2229580Domain d2uwza1: 2uwz A:1-52 [304484]
        automated match to d1wgta1
        complexed with gol, gyt
      2. 2229581Domain d2uwza2: 2uwz A:53-86 [304485]
        automated match to d1wgta2
        complexed with gol, gyt
      3. 2229582Domain d2uwza3: 2uwz A:87-129 [304486]
        automated match to d1wgta3
        complexed with gol, gyt
      4. 2229583Domain d2uwza4: 2uwz A:130-171 [304487]
        automated match to d1wgta3
        complexed with gol, gyt
      5. 2229584Domain d2uwzb1: 2uwz B:2-52 [304488]
        automated match to d1wgta1
        complexed with gol, gyt
      6. 2229585Domain d2uwzb2: 2uwz B:53-86 [304489]
        automated match to d1wgta2
        complexed with gol, gyt
      7. 2229586Domain d2uwzb3: 2uwz B:87-129 [304490]
        automated match to d1wgta3
        complexed with gol, gyt
      8. 2229587Domain d2uwzb4: 2uwz B:130-171 [304491]
        automated match to d1wgta3
        complexed with gol, gyt
    2. Domains for 2x52:
      1. 2229572Domain d2x52a1: 2x52 A:1-52 [244414]
        automated match to d2uvoa1
        complexed with gol, gyt
      2. 2229573Domain d2x52a2: 2x52 A:53-86 [244415]
        automated match to d2uvoa2
        complexed with gol, gyt
      3. 2229574Domain d2x52a3: 2x52 A:87-129 [244416]
        automated match to d2uvoa3
        complexed with gol, gyt
      4. 2229575Domain d2x52a4: 2x52 A:130-171 [244417]
        automated match to d2uvob4
        complexed with gol, gyt
      5. 2229576Domain d2x52b1: 2x52 B:2-52 [244418]
        automated match to d2uvoa1
        complexed with gol, gyt
      6. 2229577Domain d2x52b2: 2x52 B:53-86 [244419]
        automated match to d2uvoa2
        complexed with gol, gyt
      7. 2229578Domain d2x52b3: 2x52 B:87-129 [244420]
        automated match to d2uvoa3
        complexed with gol, gyt
      8. 2229579Domain d2x52b4: 2x52 B:130-171 [244421]
        automated match to d2uvob4
        complexed with gol, gyt
  3. 2285809Moringa oleifera [TaxId:3735] [329110] (1 PDB entry)

More info for Protein automated matches from g.3.1.0: automated matches

Timeline for Protein automated matches from g.3.1.0: automated matches: