Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2814470Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
    one turn of helix is made by two pairs of antiparallel strands linked with short turns
    has appearance of a sandwich of distinct architecture and jelly-roll topology
  4. 2815433Superfamily b.82.2: Clavaminate synthase-like [51197] (16 families) (S)
    Iron and ketoglutarate-dependent enzymes; elaborated version of this common fold
  5. 2816443Family b.82.2.15: proly-4-hydroxylase (P4H, PHD) like [254173] (3 proteins)
    Pfam PF13640; PubMed 16782814
  6. 2816451Protein automated matches [254532] (2 species)
    not a true protein

Species:

  1. 2816452Green alga (Chlamydomonas reinhardtii) [TaxId:3055] [255264] (2 PDB entries)
    1. Domains for 2jij:
      1. 2816456Domain d2jija1: 2jij A:29-251 [242225]
        Other proteins in same PDB: d2jija2, d2jijb2, d2jijc2
        automated match to d2jiga_
        complexed with cl
      2. 2816457Domain d2jijb1: 2jij B:29-250 [242226]
        Other proteins in same PDB: d2jija2, d2jijb2, d2jijc2
        automated match to d2jiga_
        complexed with cl
      3. 2816458Domain d2jijc1: 2jij C:29-249 [242227]
        Other proteins in same PDB: d2jija2, d2jijb2, d2jijc2
        automated match to d2jiga_
        complexed with cl
    2. Domains for 2v4a:
      1. 2816453Domain d2v4aa1: 2v4a A:29-249 [243838]
        Other proteins in same PDB: d2v4aa2, d2v4ac2, d2v4ad2
        automated match to d2jiga_
        complexed with cl, dms, gol, so4
      2. 2816454Domain d2v4ac1: 2v4a C:29-249 [243839]
        Other proteins in same PDB: d2v4aa2, d2v4ac2, d2v4ad2
        automated match to d2jiga_
        complexed with cl, dms, gol, so4
      3. 2816455Domain d2v4ad1: 2v4a D:29-249 [243840]
        Other proteins in same PDB: d2v4aa2, d2v4ac2, d2v4ad2
        automated match to d2jiga_
        complexed with cl, dms, gol, so4
  2. 2816459Human (Homo sapiens) [TaxId:9606] [255179] (35 PDB entries)
    1. Domain for 2g1m:
    2. Domain for 2hbt:
    3. Domain for 2hbu:
    4. Domain for 2y33:
    5. Domain for 2y34:
    6. Domain for 3ouh:
    7. Domain for 3oui:
    8. Domain for 3ouj:
    9. Domain for 4bqw:
    10. Domain for 4bqx:
    11. Domain for 4bqy:
    12. Domain for 4jzr:
    13. Domain for 4kbz:
    14. Domain for 4uwd:
    15. Domain for 5l9r:
      • 2816485Domain d5l9ra_: 5l9r A: [321987]
        automated match to d3ouja_
        protein/DNA complex; complexed with gol, mn, oga, pg4, so4
    16. Domain for 5lat:
      • 2816490Domain d5lata_: 5lat A: [322108]
        automated match to d3ouja_
        protein/DNA complex; complexed with bct, gol, mn, un9
    17. Domain for 5lb6:
      • 2816472Domain d5lb6a_: 5lb6 A: [322079]
        automated match to d3ouja_
        protein/DNA complex; complexed with gol, mn, so4, un9
    18. Domain for 5lbb:
    19. Domain for 5lbc:
      • 2816488Domain d5lbca_: 5lbc A: [321988]
        automated match to d3ouja_
        protein/DNA complex; complexed with bct, cl, gol, mn, so4, un9
    20. Domain for 5lbe:
    21. Domain for 5lbf:
      • 2816491Domain d5lbfa_: 5lbf A: [322019]
        automated match to d3ouja_
        protein/DNA complex; complexed with bct, mn, so4, un9
    22. Domain for 5ox5:
    23. Domain for 5ox6:
      • 2816493Domain d5ox6a_: 5ox6 A: [340285]
        automated match to d3ouja_
        protein/DNA complex; complexed with a1z, gol, mn, so4
    24. Domain for 5v18:
    25. Domain for 5v1b:
    26. Domain for 6nmq:
    27. Domain for 6qgv:
      • 2816460Domain d6qgva_: 6qgv A: [379811]
        automated match to d5lbba_
        protein/DNA complex; complexed with gol, ipa, j2h, mn, so4
    28. Domains for 6st3:
      1. 2816501Domain d6st3a_: 6st3 A: [377835]
        automated match to d5lbba_
        protein/DNA complex; complexed with fmt, luw, mn
      2. 2816502Domain d6st3b_: 6st3 B: [377838]
        automated match to d5lbba_
        protein/DNA complex; complexed with fmt, luw, mn
    29. Domains for 6yvt:
      1. 2816505Domain d6yvta_: 6yvt A: [386052]
        automated match to d3ouja_
        protein/DNA complex; complexed with gol, mn, pw2, so4
      2. 2816506Domain d6yvtb_: 6yvt B: [386059]
        automated match to d3ouja_
        protein/DNA complex; complexed with gol, mn, pw2, so4
      3. 2816507Domain d6yvtc_: 6yvt C: [386049]
        automated match to d3ouja_
        protein/DNA complex; complexed with gol, mn, pw2, so4
      4. 2816508Domain d6yvtd_: 6yvt D: [386043]
        automated match to d3ouja_
        protein/DNA complex; complexed with gol, mn, pw2, so4
      5. 2816509Domain d6yvte_: 6yvt E: [386075]
        automated match to d3ouja_
        protein/DNA complex; complexed with gol, mn, pw2, so4
      6. 2816510Domain d6yvtf_: 6yvt F: [386055]
        automated match to d3ouja_
        protein/DNA complex; complexed with gol, mn, pw2, so4
    30. Domain for 6yvw:
    31. Domain for 6yvx:
    32. Domain for 6yvz:
    33. Domain for 6yw0:
      • 2816492Domain d6yw0a_: 6yw0 A: [397941]
        automated match to d3ouja_
        protein/DNA complex; complexed with 2jp, bct, fe, mly
    34. Domains for 6zbn:
      1. 2816475Domain d6zbna_: 6zbn A: [402915]
        automated match to d5lbba_
        complexed with gol, mn, qee
      2. 2816476Domain d6zbnb_: 6zbn B: [402893]
        automated match to d5lbba_
        complexed with gol, mn, qee
      3. 2816477Domain d6zbnc_: 6zbn C: [402889]
        automated match to d5lbba_
        complexed with gol, mn, qee
      4. 2816478Domain d6zbnd_: 6zbn D: [402913]
        automated match to d5lbba_
        complexed with gol, mn, qee
      5. 2816479Domain d6zbne_: 6zbn E: [402924]
        automated match to d5lbba_
        complexed with gol, mn, qee
      6. 2816480Domain d6zbnf_: 6zbn F: [402890]
        automated match to d5lbba_
        complexed with gol, mn, qee
    35. Domains for 6zbo:
      1. 2816462Domain d6zboa_: 6zbo A: [402888]
        automated match to d5lbba_
        complexed with cl, mn, qeq
      2. 2816463Domain d6zbob_: 6zbo B: [402856]
        automated match to d5lbba_
        complexed with cl, mn, qeq
      3. 2816464Domain d6zboc_: 6zbo C: [402887]
        automated match to d5lbba_
        complexed with cl, mn, qeq
      4. 2816465Domain d6zbod_: 6zbo D: [402860]
        automated match to d5lbba_
        complexed with cl, mn, qeq
      5. 2816466Domain d6zboe_: 6zbo E: [402892]
        automated match to d5lbba_
        complexed with cl, mn, qeq
      6. 2816467Domain d6zbof_: 6zbo F: [402857]
        automated match to d5lbba_
        complexed with cl, mn, qeq

More info for Protein automated matches from b.82.2.15: proly-4-hydroxylase (P4H, PHD) like

Timeline for Protein automated matches from b.82.2.15: proly-4-hydroxylase (P4H, PHD) like: