SCOPe 2.05: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.05
Class a: All alpha proteins [46456] (286 folds)
Fold a.60: SAM domain-like [47768] (16 superfamilies)
4-5 helices; bundle of two orthogonally packed alpha-hairpins; involved in the interactions with DNA and proteins
Superfamily a.60.12: PsbU/PolX domain-like [81585] (3 families)
contains one classic and one pseudo HhH motifs
Family a.60.12.0: automated matches [254215] (1 protein)
not a true family
Protein automated matches [254483] (3 species)
not a true protein

Species:

Human (Homo sapiens) [TaxId:9606] [255047] (5 PDB entries)
1. Domain for 2bcr:
  - Domain d2bcra2: 2bcr A:329-385 [128308]
    Other proteins in same PDB: d2bcra1, d2bcra3
    automated match to d2bcqa2
    protein/DNA complex; complexed with edo, mg, na, ppv
2. Domain for 2bcs:
  - Domain d2bcsa2: 2bcs A:329-385 [128311]
    Other proteins in same PDB: d2bcsa1, d2bcsa3
    automated match to d2pfna2
    protein/DNA complex; complexed with mg, na, ppv
3. Domain for 2bcu:
  - Domain d2bcua2: 2bcu A:329-385 [128314]
    Other proteins in same PDB: d2bcua1, d2bcua3
    automated match to d2pfna2
    protein/DNA complex; complexed with na, ppv
4. Domain for 2bcv:
  - Domain d2bcva2: 2bcv A:329-385 [128317]
    Other proteins in same PDB: d2bcva1, d2bcva3
    automated match to d2pfna2
    protein/DNA complex; complexed with mg, na, ttp
5. Domain for 4lzd:
  - Domain d4lzda2: 4lzd A:231-289 [266711]
    Other proteins in same PDB: d4lzda1, d4lzda3
    automated match to d2ihma2
    complexed with cl, edo, imd, na
Mouse (Mus musculus) [TaxId:10090] [255237] (29 PDB entries)
1. Domains for 2ihm:
  1. Domain d2ihma2: 2ihm A:231-289 [242124]
    Other proteins in same PDB: d2ihma1, d2ihma3, d2ihmb1, d2ihmb3
    automated match to d1jmsa3
    protein/DNA complex; complexed with d3t, mg, na
  2. Domain d2ihmb2: 2ihm B:231-289 [242127]
    Other proteins in same PDB: d2ihma1, d2ihma3, d2ihmb1, d2ihmb3
    automated match to d1jmsa3
    protein/DNA complex; complexed with d3t, mg, na
2. Domain for 4i27:
  - Domain d4i27a2: 4i27 A:243-302 [252547]
    Other proteins in same PDB: d4i27a1, d4i27a3
    automated match to d1jmsa3
    protein/DNA complex; complexed with d3t, mg, na
3. Domain for 4i28:
  - Domain d4i28a2: 4i28 A:243-302 [252550]
    Other proteins in same PDB: d4i28a1, d4i28a3
    automated match to d1jmsa3
    protein/DNA complex; complexed with mg, na, zn
4. Domain for 4i29:
  - Domain d4i29a2: 4i29 A:243-302 [252553]
    Other proteins in same PDB: d4i29a1, d4i29a3
    automated match to d1jmsa3
    protein/DNA complex; complexed with mn, na
5. Domain for 4i2a:
  - Domain d4i2aa2: 4i2a A:243-302 [252556]
    Other proteins in same PDB: d4i2aa1, d4i2aa3
    automated match to d1jmsa3
    protein/DNA complex; complexed with mg, na
6. Domain for 4i2b:
  - Domain d4i2ba2: 4i2b A:243-302 [252559]
    Other proteins in same PDB: d4i2ba1, d4i2ba3
    automated match to d1jmsa3
    protein/DNA complex; complexed with apc, mg, na
7. Domain for 4i2c:
  - Domain d4i2ca2: 4i2c A:243-302 [252562]
    Other proteins in same PDB: d4i2ca1, d4i2ca3
    automated match to d1jmsa3
    protein/DNA complex; complexed with apc, mn, na
8. Domain for 4i2d:
  - Domain d4i2da2: 4i2d A:243-302 [252565]
    Other proteins in same PDB: d4i2da1, d4i2da3
    automated match to d1jmsa3
    complexed with apc, mg, na, zn
9. Domain for 4i2e:
  - Domain d4i2ea2: 4i2e A:243-302 [252568]
    Other proteins in same PDB: d4i2ea1, d4i2ea3
    automated match to d1jmsa3
    protein/DNA complex; complexed with apc, co, na
10. Domain for 4i2f:
  - Domain d4i2fa2: 4i2f A:243-302 [252571]
    Other proteins in same PDB: d4i2fa1, d4i2fa3
    automated match to d1jmsa3
    protein/DNA complex; complexed with mg, na, zn
11. Domain for 4i2g:
  - Domain d4i2ga2: 4i2g A:243-302 [252574]
    Other proteins in same PDB: d4i2ga1, d4i2ga3
    automated match to d1jmsa3
    protein/DNA complex; complexed with co, mg, na
12. Domain for 4i2h:
  - Domain d4i2ha2: 4i2h A:243-302 [252577]
    Other proteins in same PDB: d4i2ha1, d4i2ha3
    automated match to d1jmsa3
    protein/DNA complex; complexed with apc, mg, na, zn
13. Domain for 4i2i:
  - Domain d4i2ia2: 4i2i A:243-302 [252580]
    Other proteins in same PDB: d4i2ia1, d4i2ia3
    automated match to d1jmsa3
    complexed with ap5, mg, zn
14. Domain for 4i2j:
  - Domain d4i2ja2: 4i2j A:243-302 [252583]
    Other proteins in same PDB: d4i2ja1, d4i2ja3
    automated match to d1jmsa3
    complexed with dcp, zn
15. Domain for 4iqt:
  - Domain d4iqta2: 4iqt A:243-302 [252673]
    Other proteins in same PDB: d4iqta1, d4iqta3
    automated match to d1jmsa3
    complexed with 1fo
16. Domain for 4iqu:
  - Domain d4iqua2: 4iqu A:243-302 [252676]
    Other proteins in same PDB: d4iqua1, d4iqua3
    automated match to d1jmsa3
    complexed with 1fq, na
17. Domain for 4iqv:
  - Domain d4iqva2: 4iqv A:243-302 [252679]
    Other proteins in same PDB: d4iqva1, d4iqva3
    automated match to d1jmsa3
    protein/DNA complex; complexed with 1fo, na
18. Domain for 4iqw:
  - Domain d4iqwa2: 4iqw A:243-302 [252682]
    Other proteins in same PDB: d4iqwa1, d4iqwa3
    automated match to d1jmsa3
    protein/DNA complex; complexed with 1fq, na
19. Domain for 4qz8:
  - Domain d4qz8a2: 4qz8 A:243-302 [273687]
    Other proteins in same PDB: d4qz8a1, d4qz8a3
    automated match to d1jmsa3
    protein/DNA complex; complexed with dct, mg, na
20. Domain for 4qz9:
  - Domain d4qz9a2: 4qz9 A:243-302 [273690]
    Other proteins in same PDB: d4qz9a1, d4qz9a3
    automated match to d1jmsa3
    protein/DNA complex; complexed with dct, mg, na
21. Domain for 4qza:
  - Domain d4qzaa2: 4qza A:243-302 [273693]
    Other proteins in same PDB: d4qzaa1, d4qzaa3
    automated match to d1jmsa3
    protein/DNA complex; complexed with dct, mg, na
22. Domain for 4qzb:
  - Domain d4qzba2: 4qzb A:243-302 [273696]
    Other proteins in same PDB: d4qzba1, d4qzba3
    automated match to d1jmsa3
    protein/DNA complex; complexed with dct, mg, na
23. Domain for 4qzc:
  - Domain d4qzca2: 4qzc A:243-302 [273699]
    Other proteins in same PDB: d4qzca1, d4qzca3
    automated match to d1jmsa3
    protein/DNA complex; complexed with dct, mg, na; mutant
24. Domain for 4qzd:
  - Domain d4qzda2: 4qzd A:243-302 [273702]
    Other proteins in same PDB: d4qzda1, d4qzda3
    automated match to d1jmsa3
    protein/DNA complex; complexed with dct, mg, na; mutant
25. Domain for 4qze:
  - Domain d4qzea2: 4qze A:243-302 [273714]
    Other proteins in same PDB: d4qzea1, d4qzea3
    automated match to d1jmsa3
    protein/DNA complex; complexed with dct, mg, na; mutant
26. Domain for 4qzf:
  - Domain d4qzfa2: 4qzf A:243-302 [273705]
    Other proteins in same PDB: d4qzfa1, d4qzfa3
    automated match to d1jmsa3
    protein/DNA complex; complexed with dct, mg, na; mutant
27. Domain for 4qzg:
  - Domain d4qzga2: 4qzg A:243-302 [273708]
    Other proteins in same PDB: d4qzga1, d4qzga3
    automated match to d1jmsa3
    protein/DNA complex; complexed with dct, mg, na; mutant
28. Domain for 4qzh:
  - Domain d4qzha2: 4qzh A:243-302 [273711]
    Other proteins in same PDB: d4qzha1, d4qzha3
    automated match to d1jmsa3
    protein/DNA complex; complexed with dct, mg, na; mutant
29. Domain for 4qzi:
  - Domain d4qzia2: 4qzi A:243-302 [273717]
    Other proteins in same PDB: d4qzia1, d4qzia3
    automated match to d1jmsa3
    protein/DNA complex; complexed with dct, mg, na, zn; mutant
Norway rat (Rattus norvegicus) [TaxId:10116] [255607] (1 PDB entry)
- Domain for 2van:
  - Domain d2vana1: 2van A:91-148 [152826]
    Other proteins in same PDB: d2vana2
    automated match to d2vana1

More info for Protein automated matches from a.60.12.0: automated matches

Timeline for Protein automated matches from a.60.12.0: automated matches:

Protein automated matches from a.60.12.0: automated matches first appeared in SCOPe 2.04
Protein automated matches from a.60.12.0: automated matches appears in SCOPe 2.06
Protein automated matches from a.60.12.0: automated matches appears in the current release, SCOPe 2.08