SCOPe 2.05: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.05
Class a: All alpha proteins [46456] (286 folds)
Fold a.60: SAM domain-like [47768] (16 superfamilies)
4-5 helices; bundle of two orthogonally packed alpha-hairpins; involved in the interactions with DNA and proteins
Superfamily a.60.6: DNA polymerase beta, N-terminal domain-like [47802] (2 families)
contains one classic and one pseudo HhH motifs
Family a.60.6.0: automated matches [254214] (1 protein)
not a true family
Protein automated matches [254482] (2 species)
not a true protein

Species:

Human (Homo sapiens) [TaxId:9606] [255046] (5 PDB entries)
1. Domain for 2bcr:
  - Domain d2bcra1: 2bcr A:251-328 [128307]
    Other proteins in same PDB: d2bcra2, d2bcra3
    automated match to d1rzta1
    protein/DNA complex; complexed with edo, mg, na, ppv
2. Domain for 2bcs:
  - Domain d2bcsa1: 2bcs A:252-328 [128310]
    Other proteins in same PDB: d2bcsa2, d2bcsa3
    automated match to d1rzta1
    protein/DNA complex; complexed with mg, na, ppv
3. Domain for 2bcu:
  - Domain d2bcua1: 2bcu A:250-328 [128313]
    Other proteins in same PDB: d2bcua2, d2bcua3
    automated match to d1rzta1
    protein/DNA complex; complexed with na, ppv
4. Domain for 2bcv:
  - Domain d2bcva1: 2bcv A:253-328 [128316]
    Other proteins in same PDB: d2bcva2, d2bcva3
    automated match to d1rzta1
    protein/DNA complex; complexed with mg, na, ttp
5. Domain for 4lzd:
  - Domain d4lzda1: 4lzd A:137-230 [266710]
    Other proteins in same PDB: d4lzda2, d4lzda3
    automated match to d2ihma1
    complexed with cl, edo, imd, na
Mouse (Mus musculus) [TaxId:10090] [255236] (29 PDB entries)
1. Domains for 2ihm:
  1. Domain d2ihma1: 2ihm A:137-230 [242123]
    Other proteins in same PDB: d2ihma2, d2ihma3, d2ihmb2, d2ihmb3
    automated match to d1jmsa1
    protein/DNA complex; complexed with d3t, mg, na
  2. Domain d2ihmb1: 2ihm B:137-230 [242126]
    Other proteins in same PDB: d2ihma2, d2ihma3, d2ihmb2, d2ihmb3
    automated match to d1jmsa1
    protein/DNA complex; complexed with d3t, mg, na
2. Domain for 4i27:
  - Domain d4i27a1: 4i27 A:146-242 [252546]
    Other proteins in same PDB: d4i27a2, d4i27a3
    automated match to d1jmsa1
    protein/DNA complex; complexed with d3t, mg, na
3. Domain for 4i28:
  - Domain d4i28a1: 4i28 A:149-242 [252549]
    Other proteins in same PDB: d4i28a2, d4i28a3
    automated match to d1jmsa1
    protein/DNA complex; complexed with mg, na, zn
4. Domain for 4i29:
  - Domain d4i29a1: 4i29 A:149-242 [252552]
    Other proteins in same PDB: d4i29a2, d4i29a3
    automated match to d1jmsa1
    protein/DNA complex; complexed with mn, na
5. Domain for 4i2a:
  - Domain d4i2aa1: 4i2a A:149-242 [252555]
    Other proteins in same PDB: d4i2aa2, d4i2aa3
    automated match to d1jmsa1
    protein/DNA complex; complexed with mg, na
6. Domain for 4i2b:
  - Domain d4i2ba1: 4i2b A:149-242 [252558]
    Other proteins in same PDB: d4i2ba2, d4i2ba3
    automated match to d1jmsa1
    protein/DNA complex; complexed with apc, mg, na
7. Domain for 4i2c:
  - Domain d4i2ca1: 4i2c A:149-242 [252561]
    Other proteins in same PDB: d4i2ca2, d4i2ca3
    automated match to d1jmsa1
    protein/DNA complex; complexed with apc, mn, na
8. Domain for 4i2d:
  - Domain d4i2da1: 4i2d A:149-242 [252564]
    Other proteins in same PDB: d4i2da2, d4i2da3
    automated match to d1jmsa1
    complexed with apc, mg, na, zn
9. Domain for 4i2e:
  - Domain d4i2ea1: 4i2e A:149-242 [252567]
    Other proteins in same PDB: d4i2ea2, d4i2ea3
    automated match to d1jmsa1
    protein/DNA complex; complexed with apc, co, na
10. Domain for 4i2f:
  - Domain d4i2fa1: 4i2f A:149-242 [252570]
    Other proteins in same PDB: d4i2fa2, d4i2fa3
    automated match to d1jmsa1
    protein/DNA complex; complexed with mg, na, zn
11. Domain for 4i2g:
  - Domain d4i2ga1: 4i2g A:149-242 [252573]
    Other proteins in same PDB: d4i2ga2, d4i2ga3
    automated match to d1jmsa1
    protein/DNA complex; complexed with co, mg, na
12. Domain for 4i2h:
  - Domain d4i2ha1: 4i2h A:149-242 [252576]
    Other proteins in same PDB: d4i2ha2, d4i2ha3
    automated match to d1jmsa1
    protein/DNA complex; complexed with apc, mg, na, zn
13. Domain for 4i2i:
  - Domain d4i2ia1: 4i2i A:148-242 [252579]
    Other proteins in same PDB: d4i2ia2, d4i2ia3
    automated match to d1jmsa1
    complexed with ap5, mg, zn
14. Domain for 4i2j:
  - Domain d4i2ja1: 4i2j A:149-242 [252582]
    Other proteins in same PDB: d4i2ja2, d4i2ja3
    automated match to d1jmsa1
    complexed with dcp, zn
15. Domain for 4iqt:
  - Domain d4iqta1: 4iqt A:149-242 [252672]
    Other proteins in same PDB: d4iqta2, d4iqta3
    automated match to d1jmsa1
    complexed with 1fo
16. Domain for 4iqu:
  - Domain d4iqua1: 4iqu A:149-242 [252675]
    Other proteins in same PDB: d4iqua2, d4iqua3
    automated match to d1jmsa1
    complexed with 1fq, na
17. Domain for 4iqv:
  - Domain d4iqva1: 4iqv A:148-242 [252678]
    Other proteins in same PDB: d4iqva2, d4iqva3
    automated match to d1jmsa1
    protein/DNA complex; complexed with 1fo, na
18. Domain for 4iqw:
  - Domain d4iqwa1: 4iqw A:149-242 [252681]
    Other proteins in same PDB: d4iqwa2, d4iqwa3
    automated match to d1jmsa1
    protein/DNA complex; complexed with 1fq, na
19. Domain for 4qz8:
  - Domain d4qz8a1: 4qz8 A:148-242 [273686]
    Other proteins in same PDB: d4qz8a2, d4qz8a3
    automated match to d1jmsa1
    protein/DNA complex; complexed with dct, mg, na
20. Domain for 4qz9:
  - Domain d4qz9a1: 4qz9 A:147-242 [273689]
    Other proteins in same PDB: d4qz9a2, d4qz9a3
    automated match to d1jmsa1
    protein/DNA complex; complexed with dct, mg, na
21. Domain for 4qza:
  - Domain d4qzaa1: 4qza A:147-242 [273692]
    Other proteins in same PDB: d4qzaa2, d4qzaa3
    automated match to d1jmsa1
    protein/DNA complex; complexed with dct, mg, na
22. Domain for 4qzb:
  - Domain d4qzba1: 4qzb A:147-242 [273694]
    Other proteins in same PDB: d4qzba2, d4qzba3
    automated match to d1jmsa1
    protein/DNA complex; complexed with dct, mg, na
23. Domain for 4qzc:
  - Domain d4qzca1: 4qzc A:146-242 [273698]
    Other proteins in same PDB: d4qzca2, d4qzca3
    automated match to d1jmsa1
    protein/DNA complex; complexed with dct, mg, na; mutant
24. Domain for 4qzd:
  - Domain d4qzda1: 4qzd A:147-242 [273701]
    Other proteins in same PDB: d4qzda2, d4qzda3
    automated match to d1jmsa1
    protein/DNA complex; complexed with dct, mg, na; mutant
25. Domain for 4qze:
  - Domain d4qzea1: 4qze A:148-242 [273713]
    Other proteins in same PDB: d4qzea2, d4qzea3
    automated match to d1jmsa1
    protein/DNA complex; complexed with dct, mg, na; mutant
26. Domain for 4qzf:
  - Domain d4qzfa1: 4qzf A:147-242 [273704]
    Other proteins in same PDB: d4qzfa2, d4qzfa3
    automated match to d1jmsa1
    protein/DNA complex; complexed with dct, mg, na; mutant
27. Domain for 4qzg:
  - Domain d4qzga1: 4qzg A:148-242 [273707]
    Other proteins in same PDB: d4qzga2, d4qzga3
    automated match to d1jmsa1
    protein/DNA complex; complexed with dct, mg, na; mutant
28. Domain for 4qzh:
  - Domain d4qzha1: 4qzh A:149-242 [273710]
    Other proteins in same PDB: d4qzha2, d4qzha3
    automated match to d1jmsa1
    protein/DNA complex; complexed with dct, mg, na; mutant
29. Domain for 4qzi:
  - Domain d4qzia1: 4qzi A:148-242 [273716]
    Other proteins in same PDB: d4qzia2, d4qzia3
    automated match to d1jmsa1
    protein/DNA complex; complexed with dct, mg, na, zn; mutant

More info for Protein automated matches from a.60.6.0: automated matches

Timeline for Protein automated matches from a.60.6.0: automated matches:

Protein automated matches from a.60.6.0: automated matches first appeared in SCOPe 2.04
Protein automated matches from a.60.6.0: automated matches appears in SCOPe 2.06
Protein automated matches from a.60.6.0: automated matches appears in the current release, SCOPe 2.08