SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2172288Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. 2177253Superfamily d.58.32: FAD-linked oxidases, C-terminal domain [55103] (7 families) (S)
    duplication: contains two subdomains of this fold
  5. 2177254Family d.58.32.1: Vanillyl-alcohol oxidase-like [55104] (3 protein domains)
    automatically mapped to Pfam PF02913
  6. 2177295Protein automated matches [254446] (2 species)
    not a true protein

Species:

  1. 2177296Pseudomonas putida [TaxId:303] [254951] (2 PDB entries)
    1. Domains for 1wve:
      1. 2177298Domain d1wvea1: 1wve A:243-521 [121331]
        Other proteins in same PDB: d1wvea2, d1wveb2, d1wvec_, d1wved_
        automated match to d1wvfa1
        complexed with acy, cl, fad, hem, trs
      2. 2177299Domain d1wveb1: 1wve B:243-521 [121333]
        Other proteins in same PDB: d1wvea2, d1wveb2, d1wvec_, d1wved_
        automated match to d1wvfa1
        complexed with acy, cl, fad, hem, trs
    2. Domain for 1wvf:
  2. 2293690Penicillium simplicissimum [TaxId:69488] [336991] (2 PDB entries)
    1. Domains for 5mxj:
      1. 2293691Domain d5mxja2: 5mxj A:274-560 [336992]
        Other proteins in same PDB: d5mxja1, d5mxjb1
        automated match to d1vaoa1
        complexed with fad, gol; mutant
      2. 2293702Domain d5mxjb2: 5mxj B:274-560 [337003]
        Other proteins in same PDB: d5mxja1, d5mxjb1
        automated match to d1vaoa1
        complexed with fad, gol; mutant
    2. Domains for 5mxu:
      1. 2293693Domain d5mxua2: 5mxu A:274-560 [336994]
        Other proteins in same PDB: d5mxua1, d5mxub1
        automated match to d1vaoa1
        complexed with fad, gol; mutant
      2. 2293724Domain d5mxub2: 5mxu B:274-560 [337025]
        Other proteins in same PDB: d5mxua1, d5mxub1
        automated match to d1vaoa1
        complexed with fad, gol; mutant

More info for Protein automated matches from d.58.32.1: Vanillyl-alcohol oxidase-like

Timeline for Protein automated matches from d.58.32.1: Vanillyl-alcohol oxidase-like: