SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2200326Fold d.145: FAD-binding/transporter-associated domain-like [56175] (1 superfamily)
    consists of two alpha+beta subdomains
  4. 2200327Superfamily d.145.1: FAD-binding/transporter-associated domain-like [56176] (5 families) (S)
  5. 2200328Family d.145.1.1: FAD-linked oxidases, N-terminal domain [56177] (8 protein domains)
  6. 2200398Protein automated matches [254445] (3 species)
    not a true protein

Species:

  1. 2200399Arthrobacter nicotinovorans [TaxId:29320] [255063] (1 PDB entry)
  2. 2200404Pseudomonas putida [TaxId:303] [254950] (2 PDB entries)
    1. Domains for 1wve:
      1. 2200406Domain d1wvea2: 1wve A:7-242 [121332]
        Other proteins in same PDB: d1wvea1, d1wveb1, d1wvec_, d1wved_
        automated match to d1wvfa2
        complexed with acy, cl, fad, hem, trs
      2. 2200407Domain d1wveb2: 1wve B:7-242 [121334]
        Other proteins in same PDB: d1wvea1, d1wveb1, d1wvec_, d1wved_
        automated match to d1wvfa2
        complexed with acy, cl, fad, hem, trs
    2. Domain for 1wvf:
  3. 2293688Penicillium simplicissimum [TaxId:69488] [336989] (2 PDB entries)
    1. Domains for 5mxj:
      1. 2293689Domain d5mxja1: 5mxj A:6-273 [336990]
        Other proteins in same PDB: d5mxja2, d5mxjb2
        automated match to d1qlta2
        complexed with fad, gol; mutant
      2. 2293700Domain d5mxjb1: 5mxj B:6-273 [337001]
        Other proteins in same PDB: d5mxja2, d5mxjb2
        automated match to d1qlta2
        complexed with fad, gol; mutant
    2. Domains for 5mxu:
      1. 2293692Domain d5mxua1: 5mxu A:6-273 [336993]
        Other proteins in same PDB: d5mxua2, d5mxub2
        automated match to d1qlta2
        complexed with fad, gol; mutant
      2. 2293723Domain d5mxub1: 5mxu B:6-273 [337024]
        Other proteins in same PDB: d5mxua2, d5mxub2
        automated match to d1qlta2
        complexed with fad, gol; mutant

More info for Protein automated matches from d.145.1.1: FAD-linked oxidases, N-terminal domain

Timeline for Protein automated matches from d.145.1.1: FAD-linked oxidases, N-terminal domain: