Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2626587Class f: Membrane and cell surface proteins and peptides [56835] (60 folds)
  3. 2628400Fold f.9: Perfringolysin [56977] (1 superfamily)
    2 domains: (1) alpha+beta; (2) all-beta, similar to the CalB domain fold but the two last strands are transposed
  4. 2628401Superfamily f.9.1: Perfringolysin [56978] (2 families) (S)
    automatically mapped to Pfam PF01289
  5. 2628421Family f.9.1.0: automated matches [254195] (1 protein)
    not a true family
  6. 2628422Protein automated matches [254427] (5 species)
    not a true protein

Species:

  1. 2628423Desulfobulbus propionicus [TaxId:577650] [377727] (1 PDB entry)
  2. 2628426Gardnerella vaginalis [TaxId:2702] [321723] (1 PDB entry)
  3. 2628429Pneumococcus (Streptococcus pneumoniae) [TaxId:1313] [275206] (7 PDB entries)
    1. Domain for 4qqa:
    2. Domain for 4qqq:
    3. Domain for 4zgh:
    4. Domain for 5aod:
    5. Domains for 5aoe:
      1. 2628433Domain d5aoea1: 5aoe A:1-471 [323503]
        Other proteins in same PDB: d5aoea2, d5aoeb2
        automated match to d1s3ra_
        mutant
      2. 2628434Domain d5aoeb1: 5aoe B:1-471 [323691]
        Other proteins in same PDB: d5aoea2, d5aoeb2
        automated match to d1s3ra_
        mutant
    6. Domain for 5cr6:
    7. Domain for 6jmp:
  4. 2628438Streptococcus intermedius [TaxId:1338] [254886] (3 PDB entries)
    1. Domains for 1s3r:
      1. 2628439Domain d1s3ra_: 1s3r A: [240753]
        automated match to d1m3ia_
        complexed with so4
      2. 2628440Domain d1s3rb_: 1s3r B: [240754]
        automated match to d1m3ia_
        complexed with so4
    2. Domain for 5imt:
    3. Domains for 5imw:
      1. 2628442Domain d5imwa_: 5imw A: [321796]
        automated match to d1s3ra_
      2. 2628443Domain d5imwb_: 5imw B: [321778]
        automated match to d1s3ra_
  5. 2628444Streptococcus suis [TaxId:391295] [255870] (1 PDB entry)

More info for Protein automated matches from f.9.1.0: automated matches

Timeline for Protein automated matches from f.9.1.0: automated matches:

  • Protein automated matches from f.9.1.0: automated matches first appeared in SCOPe 2.04
  • Protein automated matches from f.9.1.0: automated matches appears in SCOPe 2.06
  • Protein automated matches from f.9.1.0: automated matches does not appear in SCOPe 2.08