Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1510239Class b: All beta proteins [48724] (176 folds)
  3. 1544753Fold b.44: Elongation factor/aminomethyltransferase common domain [50464] (2 superfamilies)
    barrel, closed; n=6, S=10; greek-key
  4. 1544754Superfamily b.44.1: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain [50465] (2 families) (S)
    probably related to the second domain and its superfamiy by a circular permutation
  5. 1544858Family b.44.1.0: automated matches [254194] (1 protein)
    not a true family
  6. 1544859Protein automated matches [254425] (11 species)
    not a true protein

Species:

  1. 1544860Aeropyrum pernix [TaxId:272557] [256139] (2 PDB entries)
    1. Domain for 3vmf:
    2. Domain for 3wxm:
  2. 1544863Aeropyrum pernix [TaxId:56636] [255748] (1 PDB entry)
  3. 1544868Escherichia coli K-12 [TaxId:83333] [256112] (3 PDB entries)
    1. Domain for 3u2q:
    2. Domains for 3u6b:
      1. 1544869Domain d3u6ba3: 3u6b A:297-393 [250089]
        Other proteins in same PDB: d3u6ba1, d3u6ba2, d3u6bb1, d3u6bb2
        automated match to d1d8ta2
        complexed with gdp, mg
      2. 1544870Domain d3u6bb3: 3u6b B:297-393 [250092]
        Other proteins in same PDB: d3u6ba1, d3u6ba2, d3u6bb1, d3u6bb2
        automated match to d1d8ta2
        complexed with gdp, mg
    3. Domains for 3u6k:
      1. 1544871Domain d3u6ka3: 3u6k A:297-393 [250097]
        Other proteins in same PDB: d3u6ka1, d3u6ka2, d3u6kb1, d3u6kb2
        automated match to d1d8ta2
        complexed with gdp, mg
      2. 1544872Domain d3u6kb3: 3u6k B:297-393 [250100]
        Other proteins in same PDB: d3u6ka1, d3u6ka2, d3u6kb1, d3u6kb2
        automated match to d1d8ta2
        complexed with gdp, mg
  4. 1544874Escherichia coli [TaxId:469008] [257411] (1 PDB entry)
  5. 1544876Oryctolagus cuniculus [TaxId:9986] [259164] (1 PDB entry)
  6. 1544879Pseudomonas putida [TaxId:160488] [256313] (2 PDB entries)
    1. Domains for 4iw3:
      1. 1544885Domain d4iw3b3: 4iw3 B:305-397 [252734]
        Other proteins in same PDB: d4iw3b1, d4iw3b2, d4iw3k1, d4iw3k2
        automated match to d1b23p2
        complexed with gdp, mg, mn, oga
      2. 1544886Domain d4iw3k3: 4iw3 K:305-397 [252737]
        Other proteins in same PDB: d4iw3b1, d4iw3b2, d4iw3k1, d4iw3k2
        automated match to d1b23p2
        complexed with gdp, mg, mn, oga
    2. Domains for 4j0q:
      1. 1544880Domain d4j0qa3: 4j0q A:305-397 [252783]
        Other proteins in same PDB: d4j0qa1, d4j0qa2, d4j0qb1, d4j0qb2, d4j0qc1, d4j0qc2, d4j0qd1, d4j0qd2, d4j0qe1, d4j0qe2
        automated match to d1b23p2
        complexed with gdp, mes, mg, mpd
      2. 1544881Domain d4j0qb3: 4j0q B:305-397 [252786]
        Other proteins in same PDB: d4j0qa1, d4j0qa2, d4j0qb1, d4j0qb2, d4j0qc1, d4j0qc2, d4j0qd1, d4j0qd2, d4j0qe1, d4j0qe2
        automated match to d1b23p2
        complexed with gdp, mes, mg, mpd
      3. 1544882Domain d4j0qc3: 4j0q C:305-397 [252789]
        Other proteins in same PDB: d4j0qa1, d4j0qa2, d4j0qb1, d4j0qb2, d4j0qc1, d4j0qc2, d4j0qd1, d4j0qd2, d4j0qe1, d4j0qe2
        automated match to d1b23p2
        complexed with gdp, mes, mg, mpd
      4. 1544883Domain d4j0qd3: 4j0q D:305-397 [252792]
        Other proteins in same PDB: d4j0qa1, d4j0qa2, d4j0qb1, d4j0qb2, d4j0qc1, d4j0qc2, d4j0qd1, d4j0qd2, d4j0qe1, d4j0qe2
        automated match to d1b23p2
        complexed with gdp, mes, mg, mpd
      5. 1544884Domain d4j0qe3: 4j0q E:305-397 [252795]
        Other proteins in same PDB: d4j0qa1, d4j0qa2, d4j0qb1, d4j0qb2, d4j0qc1, d4j0qc2, d4j0qd1, d4j0qd2, d4j0qe1, d4j0qe2
        automated match to d1b23p2
        complexed with gdp, mes, mg, mpd
  7. 1544887Sulfolobus solfataricus [TaxId:2287] [255783] (3 PDB entries)
    1. Domains for 3cw2:
      1. 1544890Domain d3cw2a3: 3cw2 A:321-415 [239190]
        Other proteins in same PDB: d3cw2a1, d3cw2a2, d3cw2b1, d3cw2b2, d3cw2c1, d3cw2c2, d3cw2c3, d3cw2d1, d3cw2d2, d3cw2d3, d3cw2e1, d3cw2e2, d3cw2f1, d3cw2f2, d3cw2g1, d3cw2g2, d3cw2g3, d3cw2h1, d3cw2h2, d3cw2h3
        automated match to d2qn6a2
      2. 1544891Domain d3cw2b3: 3cw2 B:321-415 [239193]
        Other proteins in same PDB: d3cw2a1, d3cw2a2, d3cw2b1, d3cw2b2, d3cw2c1, d3cw2c2, d3cw2c3, d3cw2d1, d3cw2d2, d3cw2d3, d3cw2e1, d3cw2e2, d3cw2f1, d3cw2f2, d3cw2g1, d3cw2g2, d3cw2g3, d3cw2h1, d3cw2h2, d3cw2h3
        automated match to d2qn6a2
      3. 1544892Domain d3cw2e3: 3cw2 E:321-415 [239196]
        Other proteins in same PDB: d3cw2a1, d3cw2a2, d3cw2b1, d3cw2b2, d3cw2c1, d3cw2c2, d3cw2c3, d3cw2d1, d3cw2d2, d3cw2d3, d3cw2e1, d3cw2e2, d3cw2f1, d3cw2f2, d3cw2g1, d3cw2g2, d3cw2g3, d3cw2h1, d3cw2h2, d3cw2h3
        automated match to d2qn6a2
      4. 1544893Domain d3cw2f3: 3cw2 F:321-415 [239199]
        Other proteins in same PDB: d3cw2a1, d3cw2a2, d3cw2b1, d3cw2b2, d3cw2c1, d3cw2c2, d3cw2c3, d3cw2d1, d3cw2d2, d3cw2d3, d3cw2e1, d3cw2e2, d3cw2f1, d3cw2f2, d3cw2g1, d3cw2g2, d3cw2g3, d3cw2h1, d3cw2h2, d3cw2h3
        automated match to d2qn6a2
    2. Domain for 3pen:
    3. Domain for 4nbs:
  8. 1544894Sulfolobus solfataricus [TaxId:273057] [256085] (1 PDB entry)
  9. Thermus aquaticus [TaxId:271] [254882] (1 PDB entry)
  10. 1544900Thermus thermophilus HB8 [TaxId:300852] [255084] (2 PDB entries)
    1. Domain for 2c77:
    2. Domain for 2c78:
  11. 1544903Thermus thermophilus [TaxId:274] [256285] (6 PDB entries)
    1. Domain for 4h9g:
    2. Domain for 4lbv:
    3. Domain for 4lbw:
    4. Domain for 4lby:
    5. Domain for 4lbz:
    6. Domain for 4lc0:

More info for Protein automated matches from b.44.1.0: automated matches

Timeline for Protein automated matches from b.44.1.0: automated matches: