SCOPe 2.04: Domain d4i28a3: 4i28 A:303-510

Lineage for d4i28a3 (4i28 A:303-510)

1. Root: SCOPe 2.04

2. Class d: Alpha and beta proteins (a+b) [53931] (380 folds)

3. Fold d.218: Nucleotidyltransferase [81302] (1 superfamily)
   core: alpha-beta-turn-beta-X-beta-(alpha); mixed beta-sheet, order of core strands: 123

4. Superfamily d.218.1: Nucleotidyltransferase [81301] (16 families)

5. Family d.218.1.2: DNA polymerase beta-like [81300] (5 proteins)
   insert X in the core is an alpha-beta(2) unit; mixed 5-stranded sheet, order: 12543; contains extra C-terminal alpha+beta subdomain

6. Protein automated matches [254484] (3 species)
   not a true protein

7. Species Mouse (Mus musculus) [TaxId:10090] [256295] (17 PDB entries)

8. Domain d4i28a3: 4i28 A:303-510 [252551]
   Other proteins in same PDB: d4i28a1, d4i28a2
   automated match to d1jmsa4
   protein/DNA complex; complexed with mg, na, zn

Details for d4i28a3

PDB Entry: 4i28, 2.15 Å

PDB Description: binary complex of mouse tdt with ssdna and zn++

PDB Compounds: (A:) DNA nucleotidylexotransferase

SCOPe Domain Sequences for d4i28a3:

Sequence, based on SEQRES records:

>d4i28a3 d.218.1.2 (A:303-510) automated matches {Mouse (Mus musculus) [TaxId: 10090]}
vnrpeaeavsmlvkeavvtflpdalvtmtggfrrgkmtghdvdflitspeatedeeqqll
hkvtdfwkqqglllycdilestfekfkqpsrkvdaldhfqkcflilkldhgrvhseksgq
qegkgwkairvdlvmcpydrrafallgwtgsrqferdlrryatherkmmldnhalydrtk
rvfleaeseeeifahlgldyiepwerna

Sequence, based on observed residues (ATOM records):

>d4i28a3 d.218.1.2 (A:303-510) automated matches {Mouse (Mus musculus) [TaxId: 10090]}
vnrpeaeavsmlvkeavvtflpdalvtmtggfrrgkmtghdvdflitspeatedeeqqll
hkvtdfwkqqglllycdilestfekfkqpsldhfqkcflilkldhgrvhsekgkgwkair
vdlvmcpydrrafallgwtgsrqferdlrryatherkmmldnhalydrtkrvfleaesee
eifahlgldyiepwerna

Timeline for d4i28a3:

• d4i28a3 is new in SCOPe 2.04-stable
  
• d4i28a3 appears in SCOPe 2.05
  
• d4i28a3 appears in the current release, SCOPe 2.08