Lineage for d2sebd1 (2seb D:2-121)

  1. Root: SCOPe 2.02
  2. 1103260Class b: All beta proteins [48724] (174 folds)
  3. 1123681Fold b.40: OB-fold [50198] (16 superfamilies)
    barrel, closed or partly opened n=5, S=10 or S=8; greek-key
  4. 1123908Superfamily b.40.2: Bacterial enterotoxins [50203] (2 families) (S)
  5. 1124414Family b.40.2.2: Superantigen toxins, N-terminal domain [50219] (15 proteins)
  6. 1124436Protein Staphylococcal enterotoxin B, SEB [50226] (1 species)
  7. 1124437Species Staphylococcus aureus [TaxId:1280] [50227] (12 PDB entries)
  8. 1124449Domain d2sebd1: 2seb D:2-121 [25192]
    Other proteins in same PDB: d2seba1, d2seba2, d2sebb1, d2sebb2, d2sebd2
    complexed with nag

Details for d2sebd1

PDB Entry: 2seb (more details), 2.5 Å

PDB Description: x-ray crystal structure of hla-dr4 complexed with a peptide from human collagen ii
PDB Compounds: (D:) enterotoxin type b

SCOPe Domain Sequences for d2sebd1:

Sequence, based on SEQRES records: (download)

>d2sebd1 b.40.2.2 (D:2-121) Staphylococcal enterotoxin B, SEB {Staphylococcus aureus [TaxId: 1280]}
sqpdpkpdelhksskftglmenmkvlyddnhvsainvksidqflyfdliysikdtklgny
dnvrvefknkdladkykdkyvdvfganyyyqcyfskktndinshqtdkrktcmyggvteh

Sequence, based on observed residues (ATOM records): (download)

>d2sebd1 b.40.2.2 (D:2-121) Staphylococcal enterotoxin B, SEB {Staphylococcus aureus [TaxId: 1280]}
sqpdpkpdelhksskftglmenmkvlyddnhvsainvksidqflyfdliysikydnvrve
fknkdladkykdkyvdvfganyyyqcyfskrktcmyggvteh

SCOPe Domain Coordinates for d2sebd1:

Click to download the PDB-style file with coordinates for d2sebd1.
(The format of our PDB-style files is described here.)

Timeline for d2sebd1: