SCOPe 2.05: Domain d3vd9c3: 3vd9 C:334-625

Lineage for d3vd9c3 (3vd9 C:334-625)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.8: (Trans)glycosidases [51445] (15 families)

5. Family c.1.8.3: beta-glycanases [51487] (27 proteins)
   consist of a number of sequence families

6. Protein beta-Galactosidase, domain 3 [51510] (2 species)

7. Species Escherichia coli [TaxId:562] [51511] (42 PDB entries)
   Uniprot P00722

8. Domain d3vd9c3: 3vd9 C:334-625 [250450]
   Other proteins in same PDB: d3vd9a1, d3vd9a2, d3vd9a4, d3vd9a5, d3vd9b1, d3vd9b2, d3vd9b4, d3vd9b5, d3vd9c1, d3vd9c2, d3vd9c4, d3vd9c5, d3vd9d1, d3vd9d2, d3vd9d4, d3vd9d5
   automated match to d1jz7a5
   complexed with dms, ipt, mg, na

Details for d3vd9c3

PDB Entry: 3vd9, 2.05 Å

PDB Description: e. coli (lacz) beta-galactosidase (n460s) in complex with iptg

PDB Compounds: (C:) beta-galactosidase

SCOPe Domain Sequences for d3vd9c3:

Sequence; same for both SEQRES and ATOM records:

>d3vd9c3 c.1.8.3 (C:334-625) beta-Galactosidase, domain 3 {Escherichia coli [TaxId: 562]}
evriengllllngkpllirgvnrhehhplhgqvmdeqtmvqdillmkqnnfnavrcshyp
nhplwytlcdryglyvvdeaniethgmvpmnrltddprwlpamservtrmvqrdrnhpsv
iiwslgsesghganhdalyrwiksvdpsrpvqyegggadttatdiicpmyarvdedqpfp
avpkwsikkwlslpgetrplilceyahamgnslggfakywqafrqyprlqggfvwdwvdq
slikydengnpwsayggdfgdtpndrqfcmnglvfadrtphpalteakhqqq

Timeline for d3vd9c3:

• d3vd9c3 first appeared in SCOPe 2.04
  
• d3vd9c3 appears in SCOPe 2.06
  
• d3vd9c3 appears in the current release, SCOPe 2.08