SCOPe 2.08: Domain d3rmyc2: 3rmy C:1068-1276

Lineage for d3rmyc2 (3rmy C:1068-1276)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.42: beta-Trefoil [50352] (8 superfamilies)
   barrel, closed; n=6, S=12; and a hairpin triplet; meander
   duplication: has internal pseudo threefold symmetry

4. Superfamily b.42.4: STI-like [50386] (3 families)

5. Family b.42.4.0: automated matches [191368] (1 protein)
   not a true family

6. Protein automated matches [190445] (12 species)
   not a true protein

7. Species Clostridium botulinum [TaxId:1491] [225676] (22 PDB entries)

8. Domain d3rmyc2: 3rmy C:1068-1276 [249185]
   Other proteins in same PDB: d3rmya1, d3rmyb1, d3rmyc1, d3rmyd1
   automated match to d3pmea2
   complexed with gol; mutant

Details for d3rmyc2

PDB Entry: 3rmy, 2.3 Å

PDB Description: crystal structure of hcr/d w1238a mutant

PDB Compounds: (C:) Botulinum neurotoxin type D

SCOPe Domain Sequences for d3rmyc2:

Sequence, based on SEQRES records:

>d3rmyc2 b.42.4.0 (C:1068-1276) automated matches {Clostridium botulinum [TaxId: 1491]}
snedinivyegqilrnvikdywgnplkfdteyyiindnyidryiapesnvlvlvqypdrs
klytgnpitiksvsdknpysrilngdniilhmlynsrkymiirdtdtiyatqggecsqnc
vyalklqsnlgnygigifsiknivsknkycsqifssfrentmlladiykparfsfknayt
pvavtnyetkllstssfwkfisrdpgwve

Sequence, based on observed residues (ATOM records):

>d3rmyc2 b.42.4.0 (C:1068-1276) automated matches {Clostridium botulinum [TaxId: 1491]}
snedinivyegqilrnvikdywgnplkfdteyyiindnyidryiapesnvlvlvqypdrs
klytgnpitiksvsdknpysrilngdniilhmlynsrkymiirdtdtiyacsqncvyalk
lqsnlgnygigifsiknivsknkycsqifssfrentmlladiykparfsfknaytpvavt
nyetkllstssfwkfisrdpgwve

Timeline for d3rmyc2:

• d3rmyc2 first appeared in SCOPe 2.04
  
• d3rmyc2 appears in SCOPe 2.07