SCOPe 2.04: Domain d3ozmd2: 3ozm D:133-382

Lineage for d3ozmd2 (3ozm D:133-382)

1. Root: SCOPe 2.04

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.11: Enolase C-terminal domain-like [51604] (3 families)
   binds metal ion (magnesium or manganese) in conserved site inside barrel
   N-terminal alpha+beta domain is common to this superfamily

5. Family c.1.11.0: automated matches [227196] (1 protein)
   not a true family

6. Protein automated matches [226923] (59 species)
   not a true protein

7. Species Bordetella bronchiseptica [TaxId:518] [256003] (3 PDB entries)

8. Domain d3ozmd2: 3ozm D:133-382 [248370]
   Other proteins in same PDB: d3ozma1, d3ozmb1, d3ozmc1, d3ozmd1, d3ozme1, d3ozmf1, d3ozmg1, d3ozmh1
   automated match to d3sjna2
   complexed with dxl, gol, ly9, mg

Details for d3ozmd2

PDB Entry: 3ozm, 1.6 Å

PDB Description: Crystal structure of enolase superfamily member from Bordetella bronchiseptica complexed with Mg, m-Xylarate and L-Lyxarate

PDB Compounds: (D:) Putative mandelate racemase

SCOPe Domain Sequences for d3ozmd2:

Sequence; same for both SEQRES and ATOM records:

>d3ozmd2 c.1.11.0 (D:133-382) automated matches {Bordetella bronchiseptica [TaxId: 518]}
kfhtrgvrayassiywdltpdqaadelagwveqgftaaklkvgraprkdaanlramrqrv
gadveilvdanqslgrhdalamlrildeagcywfeeplsiddieghrilraqgtpvriat
genlytrnafndyirndaidvlqadasraggitealaisasaasahlawnphtfndiitv
aanlhlvaasphpamfewdithndlmtrlasydlklenglvqppqgpglgfeidwdfvaa
hawkgepaig

Timeline for d3ozmd2:

• d3ozmd2 is new in SCOPe 2.04-stable
  
• d3ozmd2 appears in SCOPe 2.05
  
• d3ozmd2 appears in the current release, SCOPe 2.08