SCOPe 2.04: Domain d3fvdb2: 3fvd B:128-369

Lineage for d3fvdb2 (3fvd B:128-369)

1. Root: SCOPe 2.04

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.11: Enolase C-terminal domain-like [51604] (3 families)
   binds metal ion (magnesium or manganese) in conserved site inside barrel
   N-terminal alpha+beta domain is common to this superfamily

5. Family c.1.11.0: automated matches [227196] (1 protein)
   not a true family

6. Protein automated matches [226923] (59 species)
   not a true protein

7. Species Roseovarius nubinhibens [TaxId:89187] [225251] (5 PDB entries)

8. Domain d3fvdb2: 3fvd B:128-369 [246191]
   Other proteins in same PDB: d3fvda1, d3fvdb1
   automated match to d2qdda2
   complexed with mg

Details for d3fvdb2

PDB Entry: 3fvd, 2.3 Å

PDB Description: crystal structure of a member of enolase superfamily from roseovarius nubinhibens ism complexed with magnesium

PDB Compounds: (B:) Mandelate racemase/muconate lactonizing enzyme

SCOPe Domain Sequences for d3fvdb2:

Sequence; same for both SEQRES and ATOM records:

>d3fvdb2 c.1.11.0 (B:128-369) automated matches {Roseovarius nubinhibens [TaxId: 89187]}
eaatpvpinssistgtpdqmlgliaeaaaqgyrthsakiggsdpaqdiarieaisaglpd
ghrvtfdvnrawtpaiavevlnsvrardwieqpcqtldqcahvarrvanpimldeclhef
sdhlaawsrgacegvkikpnrvggltrarqirdfgvsvgwqmhiedvggtaladtaalhl
aastpeanrlaswlghahladdpipgqgarnrdglatppsapglgvipdpealgrpvasy
de

Timeline for d3fvdb2:

• d3fvdb2 is new in SCOPe 2.04-stable
  
• d3fvdb2 appears in SCOPe 2.05
  
• d3fvdb2 appears in the current release, SCOPe 2.08