SCOPe 2.07: Domain d2yiaf1: 2yia F:11-790

Lineage for d2yiaf1 (2yia F:11-790)

1. Root: SCOPe 2.07

2. Class e: Multi-domain proteins (alpha and beta) [56572] (71 folds)

3. Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
   divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members

4. Superfamily e.8.1: DNA/RNA polymerases [56672] (8 families)
   "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain

5. Family e.8.1.0: automated matches [227142] (1 protein)
   not a true family

6. Protein automated matches [226844] (11 species)
   not a true protein

7. Species Infectious pancreatic necrosis virus [TaxId:11002] [226177] (4 PDB entries)

8. Domain d2yiaf1: 2yia F:11-790 [244766]
   Other proteins in same PDB: d2yiaa2, d2yiab2, d2yiac2, d2yiad2, d2yiae2, d2yiaf2, d2yiag2, d2yiah2
   automated match to d2yi9a_
   complexed with k

Details for d2yiaf1

PDB Entry: 2yia, 3.02 Å

PDB Description: structure of the rna polymerase vp1 from infectious pancreatic necrosis virus

PDB Compounds: (F:) RNA-directed RNA polymerase

SCOPe Domain Sequences for d2yiaf1:

Sequence; same for both SEQRES and ATOM records:

>d2yiaf1 e.8.1.0 (F:11-790) automated matches {Infectious pancreatic necrosis virus [TaxId: 11002]}
kasiltalmksttgdvedvlipkrfrpakdpldspqaaaqflkdnkyrilrpraiptmve
letdaalprlrqmvedgklkdtvsvpegttafypkyypfhkpdhdevgtfgapditllkq
ltffllendfptgpetlrqvreaiatlqygsgsysgqlnrllamkgvatgrnpnktpktv
gytneqlaklleqtlpintpkhedpdlrwapswlinytgdlstdksylphvtikssaglp
yigktkgdttaealvladsfirdlgraatsadpeagvkktitdfwylscgllfpkgeryt
qvdwdkktrniwsapypthlllsmvstpvmnesklnitntqtpslygfspfhggmdrimt
iirdsldndedlvmiyadniyilqdntwysidlekgeanctpqhmqammyylltrgwtne
dgsprynptwatfamnvapsmvvdsscllmnlqlktygqgsgnaftflnnhlmstivvae
wvkagkpnpmtkefmdleektginfkierelknlretiveavetapqdgyladgsdlppi
rpgkaveldllgwsaiysrqmemfvpvlenerliasaaypkglenkalarkpgaeiayqi
vryeairlvggwnnplletaakhmsldkrkrlevkgidvtgflddwnnmsefggdlegit
lsepltnqtlvdintpldsfdpkarpqtprspkktldevttaitsgtykdpksavwrlld
qrtklrvstlrdqalalkpasssvdnwaeateelaqqqqllmkannllkssltetreale

Timeline for d2yiaf1:

• d2yiaf1 first appeared in SCOPe 2.04, called d2yiaf_
  
• d2yiaf1 appears in SCOPe 2.06
  
• d2yiaf1 appears in the current release, SCOPe 2.08