Lineage for d2ogdb_ (2ogd B:)

  1. Root: SCOPe 2.04
  2. 1473060Class a: All alpha proteins [46456] (285 folds)
  3. 1504321Fold a.128: Terpenoid synthases [48575] (1 superfamily)
    multihelical; core: 8 helices (C-J) are arranged in 2 parallel layers
  4. 1504322Superfamily a.128.1: Terpenoid synthases [48576] (6 families) (S)
    duplication: two metal-binding sites are related by a pseudo dyad that also relates helices C-F to helices G-J
  5. 1504597Family a.128.1.0: automated matches [196408] (1 protein)
    not a true family
  6. 1504598Protein automated matches [196409] (27 species)
    not a true protein
  7. 1504727Species Trypanosome (Trypanosoma brucei) [TaxId:5691] [230726] (9 PDB entries)
  8. 1504729Domain d2ogdb_: 2ogd B: [243333]
    automated match to d2ewga_
    complexed with act, bme, mg, mpd, suf

Details for d2ogdb_

PDB Entry: 2ogd (more details), 2 Å

PDB Description: T. Brucei Farnesyl Diphosphate Synthase Complexed with Bisphosphonate BPH-527
PDB Compounds: (B:) farnesyl pyrophosphate synthase

SCOPe Domain Sequences for d2ogdb_:

Sequence, based on SEQRES records: (download)

>d2ogdb_ a.128.1.0 (B:) automated matches {Trypanosome (Trypanosoma brucei) [TaxId: 5691]}
mpmqmfmqvydeiqmflleelelkfdmdpnrvrylrkmmdttclggkynrgltvidvaes
llslspnnngeeddgarrkrvlhdacvcgwmieflqahylveddimdnsvtrrgkpcwyr
hpdvtvqcaindglllkswthmmamhffadrpflqdllcrfnrvdyttavgqlydvtsmf
dsnkldpdvsqptttdfaeftlsnykrivkyktayytyllplvmglivsealptvdmgvt
eelamlmgeyfqvqddvmdcftpperlgkvgtdiqdakcswlavtflakassaqvaefka
nygsgdsekvatvrrlyeeadlqgdyvayeaavaeqvkelieklrlcspgfaasvetlwg
ktykrqk

Sequence, based on observed residues (ATOM records): (download)

>d2ogdb_ a.128.1.0 (B:) automated matches {Trypanosome (Trypanosoma brucei) [TaxId: 5691]}
mpmqmfmqvydeiqmflleelelkfdmdpnrvrylrkmmdttclggkynrgltvidvaes
llslddgarrkrvlhdacvcgwmieflqahylveddimdnsvtrrgkpcwyrhpdvtvqc
aindglllkswthmmamhffadrpflqdllcrfnrvdyttavgqlydvtsmfdsnkldpd
vsqptttdfaeftlsnykrivkyktayytyllplvmglivsealptvdmgvteelamlmg
eyfqvqddvmdcftpperlgkvgtdiqdakcswlavtflakassaqvaefkanygsgdse
kvatvrrlyeeadlqgdyvayeaavaeqvkelieklrlcspgfaasvetlwgktykrqk

SCOPe Domain Coordinates for d2ogdb_:

Click to download the PDB-style file with coordinates for d2ogdb_.
(The format of our PDB-style files is described here.)

Timeline for d2ogdb_: