Lineage for d1y9da3 (1y9d A:366-593)

  1. Root: SCOPe 2.04
  2. 1565955Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 1592643Fold c.36: Thiamin diphosphate-binding fold (THDP-binding) [52517] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465
  4. 1592644Superfamily c.36.1: Thiamin diphosphate-binding fold (THDP-binding) [52518] (9 families) (S)
    there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules
    two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules
  5. Family c.36.1.0: automated matches [227300] (1 protein)
    not a true family
  6. Protein automated matches [227126] (15 species)
    not a true protein
  7. 1593321Species Lactobacillus plantarum [TaxId:1590] [254973] (6 PDB entries)
  8. 1593343Domain d1y9da3: 1y9d A:366-593 [240984]
    Other proteins in same PDB: d1y9da2, d1y9db2, d1y9dc2, d1y9dd2
    automated match to d1powa3
    complexed with fad, mg, na, so4, tpp

Details for d1y9da3

PDB Entry: 1y9d (more details), 2.2 Å

PDB Description: pyruvate oxidase variant v265a from lactobacillus plantarum
PDB Compounds: (A:) Pyruvate oxidase

SCOPe Domain Sequences for d1y9da3:

Sequence; same for both SEQRES and ATOM records: (download)

>d1y9da3 c.36.1.0 (A:366-593) automated matches {Lactobacillus plantarum [TaxId: 1590]}
kqegplqayqvlravnkiaepdaiysidvgdinlnanrhlkltpsnrhitsnlfatmgvg
ipgaiaaklnyperqvfnlagdggasmtmqdlatqvqyhlpvinvvftncqygfikdeqe
dtnqndfigvefndidfskiadgvhmqafrvnkieqlpdvfeqakaiaqhepvlidavit
gdrplpaeklrldsamssaadieafkqryeaqdlqplstylkqfgldd

SCOPe Domain Coordinates for d1y9da3:

Click to download the PDB-style file with coordinates for d1y9da3.
(The format of our PDB-style files is described here.)

Timeline for d1y9da3: