SCOPe 2.04: Domain d1y9da2: 1y9d A:192-365

Lineage for d1y9da2 (1y9d A:192-365)

1. Root: SCOPe 2.04

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.31: DHS-like NAD/FAD-binding domain [52466] (1 superfamily)
   3 layers: a/b/a; parallel beta-sheet of 6 strands, order 321456; Rossmann-like

4. Superfamily c.31.1: DHS-like NAD/FAD-binding domain [52467] (7 families)
   binds cofactor molecules in the opposite direction than classical Rossmann fold

5. Family c.31.1.3: Pyruvate oxidase and decarboxylase, middle domain [52475] (8 proteins)
   N-terminal domain is Pyr module, and C-terminal domain is PP module of thiamin diphosphate-binding fold

6. Protein Pyruvate oxidase [52476] (2 species)
   binds FAD

7. Species Lactobacillus plantarum [TaxId:1590] [52477] (8 PDB entries)

8. Domain d1y9da2: 1y9d A:192-365 [240983]
   Other proteins in same PDB: d1y9da1, d1y9da3, d1y9db1, d1y9db3, d1y9dc1, d1y9dc3, d1y9dd1, d1y9dd3
   automated match to d2ez9a1
   complexed with fad, mg, na, so4, tpp

Details for d1y9da2

PDB Entry: 1y9d, 2.2 Å

PDB Description: pyruvate oxidase variant v265a from lactobacillus plantarum

PDB Compounds: (A:) Pyruvate oxidase

SCOPe Domain Sequences for d1y9da2:

Sequence, based on SEQRES records:

>d1y9da2 c.31.1.3 (A:192-365) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]}
pllpepdvqavtrltqtllaaerpliyygigarkagkeleqlsktlkiplmstypakgiv
adrypaylgsanraaqkpanealaqadvvlfvgnnypfaevskafkntryflqididpak
lgkrhktdiavladaqktlaailaqvserestpwwqanlanvknwraylasled

Sequence, based on observed residues (ATOM records):

>d1y9da2 c.31.1.3 (A:192-365) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]}
pllpepdvqavtrltqtllaaerpliyygigarkagkeleqlsktlkiplmstypakgiv
adrypaylgsanraaqkpanealaqadvvlfvgnnntryflqididpaklgkrhktdiav
ladaqktlaailaqvserestpwwqanlanvknwraylasled

Timeline for d1y9da2:

• d1y9da2 is new in SCOPe 2.04-stable
  
• d1y9da2 appears in SCOPe 2.05
  
• d1y9da2 appears in the current release, SCOPe 2.08