Lineage for d3sdkf_ (3sdk F:)

  1. Root: SCOPe 2.04
  2. 1631855Class d: Alpha and beta proteins (a+b) [53931] (380 folds)
  3. 1676433Fold d.153: Ntn hydrolase-like [56234] (2 superfamilies)
    4 layers: alpha/beta/beta/alpha; has an unusual sheet-to-sheet packing
  4. 1676434Superfamily d.153.1: N-terminal nucleophile aminohydrolases (Ntn hydrolases) [56235] (8 families) (S)
    N-terminal residue provides two catalytic groups, nucleophile and proton donor
  5. 1676603Family d.153.1.4: Proteasome subunits [56251] (4 proteins)
  6. 1676715Protein Proteasome alpha subunit (non-catalytic) [56255] (7 species)
    contains an extension to the common fold at the N-terminus
  7. 1676731Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [56257] (66 PDB entries)
    The structure of yeast proteasome complexed with the proteasome activator pa26 is available from PDB (1fnt). The 1FNT entry designates protein chains by both upper case and lower case letters creating problems with its processing and presentation in SCOP; the proteasome activator pa26 structure is classified elsewhere in SCOP (a.24.8)
  8. 1676906Domain d3sdkf_: 3sdk F: [239721]
    Other proteins in same PDB: d3sdk1_, d3sdk2_, d3sdka_, d3sdkb_, d3sdkc_, d3sdkd_, d3sdke_, d3sdkg_, d3sdkh_, d3sdki_, d3sdkj_, d3sdkk_, d3sdkl_, d3sdkm_, d3sdkn_, d3sdko_, d3sdkp_, d3sdkq_, d3sdkr_, d3sdks_, d3sdku_, d3sdkv_, d3sdkw_, d3sdkx_, d3sdky_, d3sdkz_
    automated match to d3oeuf_
    complexed with mes, mg, p3n

Details for d3sdkf_

PDB Entry: 3sdk (more details), 2.7 Å

PDB Description: structure of yeast 20s open-gate proteasome with compound 34
PDB Compounds: (F:) Proteasome component C1

SCOPe Domain Sequences for d3sdkf_:

Sequence; same for both SEQRES and ATOM records: (download)

>d3sdkf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
svfspdgrnfqveyavkavengttsigikcndgvvfaveklitskllvpqknvkiqvvdr
higcvysglipdgrhlvnrgreeaasfkklyktpipipafadrlgqyvqahtlynsvrpf
gvstifggvdkngahlymlepsgsywgykgaatgkgrqsakaeleklvdhhpeglsarea
vkqaakiiylahednkekdfeleiswcslsetnglhkfvkgdllqeaidfaqkein

SCOPe Domain Coordinates for d3sdkf_:

Click to download the PDB-style file with coordinates for d3sdkf_.
(The format of our PDB-style files is described here.)

Timeline for d3sdkf_: