Lineage for d4l1ka2 (4l1k A:140-360)

  1. Root: SCOPe 2.06
  2. 2170735Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2217268Fold d.142: ATP-grasp [56058] (2 superfamilies)
    Consists of two subdomains with different alpha+beta folds
    shares functional and structural similarities with the PIPK and protein kinase superfamilies
  4. 2217269Superfamily d.142.1: Glutathione synthetase ATP-binding domain-like [56059] (11 families) (S)
  5. 2217671Family d.142.1.0: automated matches [227184] (1 protein)
    not a true family
  6. 2217672Protein automated matches [226904] (32 species)
    not a true protein
  7. 2217811Species Xanthomonas oryzae [TaxId:342109] [225705] (4 PDB entries)
  8. 2217815Domain d4l1ka2: 4l1k A:140-360 [237033]
    Other proteins in same PDB: d4l1ka1
    automated match to d3rfca2
    complexed with anp, mg

Details for d4l1ka2

PDB Entry: 4l1k (more details), 2.3 Å

PDB Description: crystal structure of d-alanine-d-alnine ligase from xanthomonas oryzae pv. oryzae with amppnp
PDB Compounds: (A:) d-alanine--d-alanine ligase

SCOPe Domain Sequences for d4l1ka2:

Sequence, based on SEQRES records: (download)

>d4l1ka2 d.142.1.0 (A:140-360) automated matches {Xanthomonas oryzae [TaxId: 342109]}
dkdmakrvlrdarlavapfvcfdrhtaahadvdtliaqlglplfvkpanqgssvgvsqvr
tadafaaalalalaydhkvlveaavagreiecavlgnavphasvcgevvvhdafysyatk
yisehgaeivipadidaqtqqriqqiavqayqalgcagmarvdvflcadgrivinevntl
pgftrisvypklwqasgldyrglitrlielalerhtddqll

Sequence, based on observed residues (ATOM records): (download)

>d4l1ka2 d.142.1.0 (A:140-360) automated matches {Xanthomonas oryzae [TaxId: 342109]}
dkdmakrvlrdarlavapfvcfdrhtaahadvdtliaqlglplfvkpanqgssvgvsqvr
tadafaaalalalaydhkvlveaavagreiecavlgnavphasvcgevvveivipadida
qtqqriqqiavqayqalgcagmarvdvflcadgrivinevntlpgftrisvypklwqasg
ldyrglitrlielalerhtddqll

SCOPe Domain Coordinates for d4l1ka2:

Click to download the PDB-style file with coordinates for d4l1ka2.
(The format of our PDB-style files is described here.)

Timeline for d4l1ka2:

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Domains from same chain:
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d4l1ka1