Lineage for d4kdfb1 (4kdf B:1-154)

  1. Root: SCOPe 2.03
  2. 1336837Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 1346342Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
    core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
    The nucleotide-binding modes of this and the next two folds/superfamilies are similar
  4. 1346343Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families) (S)
  5. 1348919Family c.2.1.5: LDH N-terminal domain-like [51848] (9 proteins)
  6. 1349129Protein Malate dehydrogenase [51849] (13 species)
  7. 1349212Species Thermus thermophilus [TaxId:274] [82300] (7 PDB entries)
    identical sequence to that from the Thermus flavus enzyme
  8. 1349226Domain d4kdfb1: 4kdf B:1-154 [236555]
    Other proteins in same PDB: d4kdfa2, d4kdfd2
    automated match to d1iz9a1

Details for d4kdfb1

PDB Entry: 4kdf (more details), 2.36 Å

PDB Description: Crystal Structure of Thermus thermophilus Malate Dehydrogenase in Complex with NAD
PDB Compounds: (B:) malate dehydrogenase

SCOPe Domain Sequences for d4kdfb1:

Sequence, based on SEQRES records: (download)

>d4kdfb1 c.2.1.5 (B:1-154) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}
mkapvrvavtgaagqigysllfriaagemlgkdqpvilqlleipqamkalegvvmeledc
afpllagleatddpkvafkdadyallvgaaprkagmerrdllqvngkifteqgralaeva
kkdvkvlvvgnpantnaliayknapglnprnfta

Sequence, based on observed residues (ATOM records): (download)

>d4kdfb1 c.2.1.5 (B:1-154) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}
mkapvrvavtgaagqigysllfriaagemlgkdqpvilqlleipqamkalegvvmeledc
afpllagleatddpkvafkdadyallvgaapllqvngkifteqgralaevakkdvkvlvv
gnpantnaliayknapglnprnfta

SCOPe Domain Coordinates for d4kdfb1:

Click to download the PDB-style file with coordinates for d4kdfb1.
(The format of our PDB-style files is described here.)

Timeline for d4kdfb1: