SCOPe 2.03: Domain d4mj1b_: 4mj1 B:

Lineage for d4mj1b_ (4mj1 B:)

1. Root: SCOPe 2.03

2. Class b: All beta proteins [48724] (174 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.6: Group I dsDNA viruses [88648] (2 families)

5. Family b.121.6.0: automated matches [227135] (1 protein)
   not a true family

6. Protein automated matches [226836] (5 species)
   not a true protein

7. Species Bk polyomavirus [TaxId:10629] [228808] (2 PDB entries)

8. Domain d4mj1b_: 4mj1 B: [235647]
   automated match to d4mj0b_
   complexed with cl, gol

Details for d4mj1b_

PDB Entry: 4mj1, 2 Å

PDB Description: unliganded BK Polyomavirus VP1 pentamer

PDB Compounds: (B:) VP1 capsid protein

SCOPe Domain Sequences for d4mj1b_:

Sequence, based on SEQRES records:

>d4mj1b_ b.121.6.0 (B:) automated matches {Bk polyomavirus [TaxId: 10629]}
vlevktgvdaitevecflnpemgdpdenlrgfslklsaendfssdsperkmlpcystari
plpnlnedltcgnllmweavtvqtevigitsmlnlhagsqkvhehgggkpiqgsnfhffa
vggdplemqgvlmnyrtkypdgtitpknptaqsqvmntdhkayldknnaypvecwvpdps
rnentryfgtftggenvppvlhvtntattvlldeqgvgplckadslyvsaadicglftns
sgtqqwrglaryfkirlrkrsvkn

Sequence, based on observed residues (ATOM records):

>d4mj1b_ b.121.6.0 (B:) automated matches {Bk polyomavirus [TaxId: 10629]}
vlevkaitevecflnpemgdpdenlrgfslklsaendfssdsperkmlpcystariplpn
lngnllmweavtvqtevigitsmlnlhagsqkvhehgggkpiqgsnfhffavggdplemq
gvlmnyrtkypdgtitpknptaqsqvmntdhkayldknnaypvecwvpdpsrnentryfg
tftggenvppvlhvtntattvlldeqgvgplckadslyvsaadicglftnssgtqqwrgl
aryfkirlrkrsvkn

Timeline for d4mj1b_:

• d4mj1b_ is new in SCOPe 2.03-stable
  
• d4mj1b_ appears in SCOPe 2.04
  
• d4mj1b_ appears in the current release, SCOPe 2.08