SCOPe 2.03: Domain d4khua2: 4khu A:376-902

Lineage for d4khua2 (4khu A:376-902)

1. Root: SCOPe 2.03

2. Class e: Multi-domain proteins (alpha and beta) [56572] (66 folds)

3. Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
   divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members

4. Superfamily e.8.1: DNA/RNA polymerases [56672] (7 families)
   "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain

5. Family e.8.1.1: DNA polymerase I [56673] (5 proteins)

6. Protein Family B DNA polymerase [56680] (7 species)

7. Species Bacteriophage RB69 [TaxId:12353] [56681] (49 PDB entries)

8. Domain d4khua2: 4khu A:376-902 [235172]
   Other proteins in same PDB: d4khua1
   automated match to d4khqa2
   protein/DNA complex; complexed with ca, na, ttp; mutant

Details for d4khua2

PDB Entry: 4khu, 2.05 Å

PDB Description: Ternary complex of rb69 mutant L415F with a ribonucleotide at -1 position

PDB Compounds: (A:) DNA polymerase

SCOPe Domain Sequences for d4khua2:

Sequence; same for both SEQRES and ATOM records:

>d4khua2 e.8.1.1 (A:376-902) Family B DNA polymerase {Bacteriophage RB69 [TaxId: 12353]}
qnkvipqgrshpvqpypgafvkepipnrykyvmsfdltsfypsiirqvnispetiagtfk
vaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitkvfnqrkehkgymlaaqrn
geiikealhnpnlsvdepldvdyrfdfsdeikekikklsakslnemlfraqrtevagmta
qinrkllinslygalgnvwfryydlrnataittfgqmalqwierkvneylnevcgtegea
fvlygdtdsiyvsadkiidkvgeskfrdtnhwvdfldkfarermepaidrgfremceymn
nkqhlmfmdreaiagpplgskgiggfwtgkkryalnvwdmegtryaepklkimgletqks
stpkavqkalkecirrmlqegeeslqeyfkefekefrqlnyisiasvssanniakydvgg
fpgpkcpfhirgiltynraikgnidapqvvegekvyvlplregnpfgdkciawpsgteit
dlikddvlhwmdytvllektfikplegftsaakldyekkaslfdmfd

Timeline for d4khua2:

• d4khua2 is new in SCOPe 2.03-stable
  
• d4khua2 appears in SCOPe 2.04
  
• d4khua2 appears in the current release, SCOPe 2.08