Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2156385Fold d.7: LysM domain [54105] (1 superfamily)
    beta-alpha(2)-beta; antiparallel strands
  4. 2156386Superfamily d.7.1: LysM domain [54106] (2 families) (S)
    automatically mapped to Pfam PF01476
  5. 2156395Family d.7.1.0: automated matches [234000] (1 protein)
    not a true family
  6. 2156396Protein automated matches [234001] (4 species)
    not a true protein

Species:

  1. 2156397Bacillus subtilis [TaxId:1423] [234002] (3 PDB entries)
    1. Domains for 4a1i:
      1. 2156398Domain d4a1ia1: 4a1i A:1-48 [234003]
        Other proteins in same PDB: d4a1ia2, d4a1ia3, d4a1ib2, d4a1ib3, d4a1ic2, d4a1ic3, d4a1id2, d4a1id3, d4a1ie2, d4a1if2, d4a1ig2, d4a1ih2
        automated match to d1y7ma2
        complexed with cd, cl, so4
      2. 2156399Domain d4a1ib1: 4a1i B:1-48 [234007]
        Other proteins in same PDB: d4a1ia2, d4a1ia3, d4a1ib2, d4a1ib3, d4a1ic2, d4a1ic3, d4a1id2, d4a1id3, d4a1ie2, d4a1if2, d4a1ig2, d4a1ih2
        automated match to d1y7ma2
        complexed with cd, cl, so4
      3. 2156400Domain d4a1ic1: 4a1i C:1-48 [234019]
        Other proteins in same PDB: d4a1ia2, d4a1ia3, d4a1ib2, d4a1ib3, d4a1ic2, d4a1ic3, d4a1id2, d4a1id3, d4a1ie2, d4a1if2, d4a1ig2, d4a1ih2
        automated match to d1y7ma2
        complexed with cd, cl, so4
      4. 2156401Domain d4a1id1: 4a1i D:1-48 [234021]
        Other proteins in same PDB: d4a1ia2, d4a1ia3, d4a1ib2, d4a1ib3, d4a1ic2, d4a1ic3, d4a1id2, d4a1id3, d4a1ie2, d4a1if2, d4a1ig2, d4a1ih2
        automated match to d1y7ma2
        complexed with cd, cl, so4
      5. 2156402Domain d4a1ie1: 4a1i E:1-48 [234011]
        Other proteins in same PDB: d4a1ia2, d4a1ia3, d4a1ib2, d4a1ib3, d4a1ic2, d4a1ic3, d4a1id2, d4a1id3, d4a1ie2, d4a1if2, d4a1ig2, d4a1ih2
        automated match to d1y7ma2
        complexed with cd, cl, so4
      6. 2156403Domain d4a1if1: 4a1i F:1-48 [234009]
        Other proteins in same PDB: d4a1ia2, d4a1ia3, d4a1ib2, d4a1ib3, d4a1ic2, d4a1ic3, d4a1id2, d4a1id3, d4a1ie2, d4a1if2, d4a1ig2, d4a1ih2
        automated match to d1y7ma2
        complexed with cd, cl, so4
      7. 2156404Domain d4a1ig1: 4a1i G:1-48 [234012]
        Other proteins in same PDB: d4a1ia2, d4a1ia3, d4a1ib2, d4a1ib3, d4a1ic2, d4a1ic3, d4a1id2, d4a1id3, d4a1ie2, d4a1if2, d4a1ig2, d4a1ih2
        automated match to d1y7ma2
        complexed with cd, cl, so4
      8. 2156405Domain d4a1ih1: 4a1i H:1-48 [234017]
        Other proteins in same PDB: d4a1ia2, d4a1ia3, d4a1ib2, d4a1ib3, d4a1ic2, d4a1ic3, d4a1id2, d4a1id3, d4a1ie2, d4a1if2, d4a1ig2, d4a1ih2
        automated match to d1y7ma2
        complexed with cd, cl, so4
    2. Domains for 4a1j:
      1. 2156407Domain d4a1ja1: 4a1j A:1-48 [234015]
        Other proteins in same PDB: d4a1ja2, d4a1ja3, d4a1jb2, d4a1jb3
        automated match to d1y7ma2
        complexed with so4
      2. 2156408Domain d4a1jb1: 4a1j B:1-48 [234025]
        Other proteins in same PDB: d4a1ja2, d4a1ja3, d4a1jb2, d4a1jb3
        automated match to d1y7ma2
        complexed with so4
    3. Domain for 4a1k:
  2. 2156409Bacillus subtilis [TaxId:224308] [256165] (2 PDB entries)
    1. Domain for 3zqd:
    2. Domain for 4a52:
  3. 2156412Thermus thermophilus [TaxId:300852] [268982] (2 PDB entries)
    1. Domains for 4uz2:
      1. 2156418Domain d4uz2a1: 4uz2 A:16-62 [309764]
        automated match to d4uz3c_
      2. 2156419Domain d4uz2a2: 4uz2 A:63-114 [309765]
        automated match to d4uz3c_
      3. 2156420Domain d4uz2b1: 4uz2 B:15-62 [309766]
        automated match to d4uz3c_
      4. 2156421Domain d4uz2b2: 4uz2 B:63-114 [309767]
        automated match to d4uz3c_
      5. 2156422Domain d4uz2c1: 4uz2 C:16-62 [309768]
        automated match to d4uz3c_
      6. 2156423Domain d4uz2c2: 4uz2 C:63-113 [309769]
        automated match to d4uz3c_
      7. 2156424Domain d4uz2d1: 4uz2 D:16-62 [309770]
        automated match to d4uz3c_
      8. 2156425Domain d4uz2d2: 4uz2 D:63-111 [309771]
        automated match to d4uz3c_
    2. Domains for 4uz3:
      1. 2156413Domain d4uz3a1: 4uz3 A:16-62 [301044]
        automated match to d4uz3c_
        complexed with dio, so4
      2. 2156414Domain d4uz3a2: 4uz3 A:63-114 [301045]
        automated match to d4uz3c_
        complexed with dio, so4
      3. 2156415Domain d4uz3b1: 4uz3 B:17-62 [301046]
        automated match to d4uz3c_
        complexed with dio, so4
      4. 2156416Domain d4uz3b2: 4uz3 B:63-110 [301047]
        automated match to d4uz3c_
        complexed with dio, so4
      5. 2156417Domain d4uz3c_: 4uz3 C: [268983]
        automated match to d1e0ga_
        complexed with dio, so4
  4. 2286794Volvox carteri [TaxId:3068] [330095] (1 PDB entry)

More info for Protein automated matches from d.7.1.0: automated matches

Timeline for Protein automated matches from d.7.1.0: automated matches: