SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2156385Fold d.7: LysM domain [54105] (1 superfamily)
    beta-alpha(2)-beta; antiparallel strands
  4. 2156386Superfamily d.7.1: LysM domain [54106] (2 families) (S)
    automatically mapped to Pfam PF01476
  5. 2156395Family d.7.1.0: automated matches [234000] (1 protein)
    not a true family
  6. 2156396Protein automated matches [234001] (4 species)
    not a true protein

Species:

  1. 2156397Bacillus subtilis [TaxId:1423] [234002] (3 PDB entries)
    1. Domains for 4a1i:
      1. 2156398Domain d4a1ia1: 4a1i A:1-48 [234003]
        Other proteins in same PDB: d4a1ia2, d4a1ia3, d4a1ib2, d4a1ib3, d4a1ic2, d4a1ic3, d4a1id2, d4a1id3, d4a1ie2, d4a1if2, d4a1ig2, d4a1ih2
        automated match to d1y7ma2
        complexed with cd, cl, so4
      2. 2156399Domain d4a1ib1: 4a1i B:1-48 [234007]
        Other proteins in same PDB: d4a1ia2, d4a1ia3, d4a1ib2, d4a1ib3, d4a1ic2, d4a1ic3, d4a1id2, d4a1id3, d4a1ie2, d4a1if2, d4a1ig2, d4a1ih2
        automated match to d1y7ma2
        complexed with cd, cl, so4
      3. 2156400Domain d4a1ic1: 4a1i C:1-48 [234019]
        Other proteins in same PDB: d4a1ia2, d4a1ia3, d4a1ib2, d4a1ib3, d4a1ic2, d4a1ic3, d4a1id2, d4a1id3, d4a1ie2, d4a1if2, d4a1ig2, d4a1ih2
        automated match to d1y7ma2
        complexed with cd, cl, so4
      4. 2156401Domain d4a1id1: 4a1i D:1-48 [234021]
        Other proteins in same PDB: d4a1ia2, d4a1ia3, d4a1ib2, d4a1ib3, d4a1ic2, d4a1ic3, d4a1id2, d4a1id3, d4a1ie2, d4a1if2, d4a1ig2, d4a1ih2
        automated match to d1y7ma2
        complexed with cd, cl, so4
      5. 2156402Domain d4a1ie1: 4a1i E:1-48 [234011]
        Other proteins in same PDB: d4a1ia2, d4a1ia3, d4a1ib2, d4a1ib3, d4a1ic2, d4a1ic3, d4a1id2, d4a1id3, d4a1ie2, d4a1if2, d4a1ig2, d4a1ih2
        automated match to d1y7ma2
        complexed with cd, cl, so4
      6. 2156403Domain d4a1if1: 4a1i F:1-48 [234009]
        Other proteins in same PDB: d4a1ia2, d4a1ia3, d4a1ib2, d4a1ib3, d4a1ic2, d4a1ic3, d4a1id2, d4a1id3, d4a1ie2, d4a1if2, d4a1ig2, d4a1ih2
        automated match to d1y7ma2
        complexed with cd, cl, so4
      7. 2156404Domain d4a1ig1: 4a1i G:1-48 [234012]
        Other proteins in same PDB: d4a1ia2, d4a1ia3, d4a1ib2, d4a1ib3, d4a1ic2, d4a1ic3, d4a1id2, d4a1id3, d4a1ie2, d4a1if2, d4a1ig2, d4a1ih2
        automated match to d1y7ma2
        complexed with cd, cl, so4
      8. 2156405Domain d4a1ih1: 4a1i H:1-48 [234017]
        Other proteins in same PDB: d4a1ia2, d4a1ia3, d4a1ib2, d4a1ib3, d4a1ic2, d4a1ic3, d4a1id2, d4a1id3, d4a1ie2, d4a1if2, d4a1ig2, d4a1ih2
        automated match to d1y7ma2
        complexed with cd, cl, so4
    2. Domains for 4a1j:
      1. 2156407Domain d4a1ja1: 4a1j A:1-48 [234015]
        Other proteins in same PDB: d4a1ja2, d4a1ja3, d4a1jb2, d4a1jb3
        automated match to d1y7ma2
        complexed with so4
      2. 2156408Domain d4a1jb1: 4a1j B:1-48 [234025]
        Other proteins in same PDB: d4a1ja2, d4a1ja3, d4a1jb2, d4a1jb3
        automated match to d1y7ma2
        complexed with so4
    3. Domain for 4a1k:
  2. 2156409Bacillus subtilis [TaxId:224308] [256165] (2 PDB entries)
    1. Domain for 3zqd:
    2. Domain for 4a52:
  3. 2156412Thermus thermophilus [TaxId:300852] [268982] (2 PDB entries)
    1. Domains for 4uz2:
      1. 2156418Domain d4uz2a1: 4uz2 A:16-62 [309764]
        automated match to d4uz3c_
      2. 2156419Domain d4uz2a2: 4uz2 A:63-114 [309765]
        automated match to d4uz3c_
      3. 2156420Domain d4uz2b1: 4uz2 B:15-62 [309766]
        automated match to d4uz3c_
      4. 2156421Domain d4uz2b2: 4uz2 B:63-114 [309767]
        automated match to d4uz3c_
      5. 2156422Domain d4uz2c1: 4uz2 C:16-62 [309768]
        automated match to d4uz3c_
      6. 2156423Domain d4uz2c2: 4uz2 C:63-113 [309769]
        automated match to d4uz3c_
      7. 2156424Domain d4uz2d1: 4uz2 D:16-62 [309770]
        automated match to d4uz3c_
      8. 2156425Domain d4uz2d2: 4uz2 D:63-111 [309771]
        automated match to d4uz3c_
    2. Domains for 4uz3:
      1. 2156413Domain d4uz3a1: 4uz3 A:16-62 [301044]
        automated match to d4uz3c_
        complexed with dio, so4
      2. 2156414Domain d4uz3a2: 4uz3 A:63-114 [301045]
        automated match to d4uz3c_
        complexed with dio, so4
      3. 2156415Domain d4uz3b1: 4uz3 B:17-62 [301046]
        automated match to d4uz3c_
        complexed with dio, so4
      4. 2156416Domain d4uz3b2: 4uz3 B:63-110 [301047]
        automated match to d4uz3c_
        complexed with dio, so4
      5. 2156417Domain d4uz3c_: 4uz3 C: [268983]
        automated match to d1e0ga_
        complexed with dio, so4
  4. 2286794Volvox carteri [TaxId:3068] [330095] (1 PDB entry)

More info for Protein automated matches from d.7.1.0: automated matches

Timeline for Protein automated matches from d.7.1.0: automated matches: