SCOPe 2.06: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.06
Class b: All beta proteins [48724] (177 folds)
Fold b.40: OB-fold [50198] (16 superfamilies)
barrel, closed or partly opened n=5, S=10 or S=8; greek-key
Superfamily b.40.16: HIN-2000 domain-like [159141] (2 families)
duplication: tandem repeat of two OB-fold domains
Family b.40.16.0: automated matches [233467] (1 protein)
not a true family
Protein automated matches [233468] (2 species)
not a true protein

Species:

Human (Homo sapiens) [TaxId:9606] [233469] (2 PDB entries)
1. Domains for 3rn2:
  1. Domain d3rn2a1: 3rn2 A:147-249 [233470]
    automated match to d2oq0d2
    protein/DNA complex; complexed with edo
  2. Domain d3rn2a2: 3rn2 A:250-340 [233471]
    automated match to d2oq0a1
    protein/DNA complex; complexed with edo
  3. Domain d3rn2b1: 3rn2 B:147-249 [233472]
    automated match to d2oq0d2
    protein/DNA complex; complexed with edo
  4. Domain d3rn2b2: 3rn2 B:250-339 [233475]
    automated match to d2oq0a1
    protein/DNA complex; complexed with edo
2. Domains for 3rn5:
  1. Domain d3rn5a1: 3rn5 A:147-249 [233473]
    automated match to d2oq0d2
    protein/DNA complex; complexed with edo
  2. Domain d3rn5a2: 3rn5 A:250-340 [233474]
    automated match to d2oq0a1
    protein/DNA complex; complexed with edo
  3. Domain d3rn5b1: 3rn5 B:147-249 [233476]
    automated match to d2oq0d2
    protein/DNA complex; complexed with edo
  4. Domain d3rn5b2: 3rn5 B:250-340 [233477]
    automated match to d2oq0a1
    protein/DNA complex; complexed with edo
  5. Domain d3rn5c1: 3rn5 C:147-249 [233480]
    automated match to d2oq0d2
    protein/DNA complex; complexed with edo
  6. Domain d3rn5c2: 3rn5 C:250-340 [233481]
    automated match to d2oq0a1
    protein/DNA complex; complexed with edo
  7. Domain d3rn5d1: 3rn5 D:148-249 [233478]
    automated match to d2oq0d2
    protein/DNA complex; complexed with edo
  8. Domain d3rn5d2: 3rn5 D:250-340 [233479]
    automated match to d2oq0a1
    protein/DNA complex; complexed with edo
Mouse (Mus musculus) [TaxId:10090] [234954] (4 PDB entries)
1. Domains for 4jbj:
  1. Domain d4jbja1: 4jbj A:3-112 [252860]
    Other proteins in same PDB: d4jbja3, d4jbjb3
    automated match to d2oq0d2
  2. Domain d4jbja2: 4jbj A:113-199 [252861]
    Other proteins in same PDB: d4jbja3, d4jbjb3
    automated match to d2oq0a1
  3. Domain d4jbjb1: 4jbj B:3-112 [252862]
    Other proteins in same PDB: d4jbja3, d4jbjb3
    automated match to d2oq0d2
  4. Domain d4jbjb2: 4jbj B:113-199 [252863]
    Other proteins in same PDB: d4jbja3, d4jbjb3
    automated match to d2oq0a1
2. Domains for 4jbk:
  1. Domain d4jbka1: 4jbk A:3-112 [252864]
    automated match to d2oq0d2
    protein/DNA complex
  2. Domain d4jbka2: 4jbk A:113-199 [252865]
    automated match to d2oq0a1
    protein/DNA complex
  3. Domain d4jbkb1: 4jbk B:3-112 [252866]
    automated match to d2oq0d2
    protein/DNA complex
  4. Domain d4jbkb2: 4jbk B:113-199 [252867]
    automated match to d2oq0a1
    protein/DNA complex
  5. Domain d4jbkc1: 4jbk C:3-112 [252868]
    automated match to d2oq0d2
    protein/DNA complex
  6. Domain d4jbkc2: 4jbk C:113-199 [252869]
    automated match to d2oq0a1
    protein/DNA complex
  7. Domain d4jbkd1: 4jbk D:3-112 [252870]
    automated match to d2oq0d2
    protein/DNA complex
  8. Domain d4jbkd2: 4jbk D:113-199 [252871]
    automated match to d2oq0a1
    protein/DNA complex
3. Domains for 4jbm:
  1. Domain d4jbma1: 4jbm A:2-97 [234955]
    Other proteins in same PDB: d4jbma3, d4jbmb3
    automated match to d2oq0d2
    protein/DNA complex
  2. Domain d4jbma2: 4jbm A:98-193 [234957]
    Other proteins in same PDB: d4jbma3, d4jbmb3
    automated match to d2oq0a1
    protein/DNA complex
  3. Domain d4jbmb1: 4jbm B:2-97 [234956]
    Other proteins in same PDB: d4jbma3, d4jbmb3
    automated match to d2oq0d2
    protein/DNA complex
  4. Domain d4jbmb2: 4jbm B:98-187 [234958]
    Other proteins in same PDB: d4jbma3, d4jbmb3
    automated match to d2oq0a1
    protein/DNA complex
4. Domains for 4l5q:
  1. Domain d4l5qa1: 4l5q A:46-155 [253527]
    Other proteins in same PDB: d4l5qa3
    automated match to d2oq0d2
  2. Domain d4l5qa2: 4l5q A:156-243 [253528]
    Other proteins in same PDB: d4l5qa3
    automated match to d2oq0a1

More info for Protein automated matches from b.40.16.0: automated matches

Timeline for Protein automated matches from b.40.16.0: automated matches:

Protein automated matches from b.40.16.0: automated matches first appeared in SCOPe 2.03
Protein automated matches from b.40.16.0: automated matches appears in SCOPe 2.05
Protein automated matches from b.40.16.0: automated matches appears in SCOPe 2.07
Protein automated matches from b.40.16.0: automated matches appears in the current release, SCOPe 2.08