SCOPe 2.08: Domain d3liea1: 3lie A:30-206

Lineage for d3liea1 (3lie A:30-206)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.110: Profilin-like [55769] (10 superfamilies)
   core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha

4. Superfamily d.110.6: Sensory domain-like [103190] (5 families)
   alpha(2)-beta(2)-alpha(2)-beta(3); possibly related to the PAS domain

5. Family d.110.6.2: YkuI C-terminal domain-like [143732] (3 proteins)
   PfamB PB021678

6. Protein GGDEF family protein VP0354, N-terminal domain [419048] (1 species)
   protein is N-terminal region; consists of two sensory domain-like domains; there is a canonical sensory (PAS) domain in the middle region

7. Species Vibrio parahaemolyticus [TaxId:670] [419535] (3 PDB entries)
   Uniprot Q87SR8 35-206

8. Domain d3liea1: 3lie A:30-206 [232843]
   Other proteins in same PDB: d3liea2, d3lieb2
   automated match to d2p7jb2
   complexed with mg

Details for d3liea1

PDB Entry: 3lie, 2.59 Å

PDB Description: crystal structure of the extracellular domain of the putative histidine kinase vphk1s-z8

PDB Compounds: (A:) Putative sensory box/GGDEF family protein

SCOPe Domain Sequences for d3liea1:

Sequence, based on SEQRES records:

>d3liea1 d.110.6.2 (A:30-206) GGDEF family protein VP0354, N-terminal domain {Vibrio parahaemolyticus [TaxId: 670]}
qallannventakealhqlaytgreynniqdqietisdllghsqslydylrepskanlti
lenmwssvarnqklykqirfldtsgtekvrikydfktsiagpslilrdksareyfkyaqs
ldneqisawgielerdkgelvyplspslrilmpisvndvrqgylvlnvdieylssll

Sequence, based on observed residues (ATOM records):

>d3liea1 d.110.6.2 (A:30-206) GGDEF family protein VP0354, N-terminal domain {Vibrio parahaemolyticus [TaxId: 670]}
qallannventakealhqlaytgreynniqdqietisdllghsqslydylrepskanlti
lenmwssvarnqklykqirfldtsgtekvrikydfktsiagpslilrdksareyfkyaqs
ldneqisawgielerdlspslrilmpisvndvrqgylvlnvdieylssll

Timeline for d3liea1:

• d3liea1 first appeared in SCOPe 2.03
  
• d3liea1 appears in SCOPe 2.07