SCOPe 2.08: Domain d4ns1b1: 4ns1 B:16-288

Lineage for d4ns1b1 (4ns1 B:16-288)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.56: Phosphorylase/hydrolase-like [53162] (8 superfamilies)
   core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops

4. Superfamily c.56.2: Purine and uridine phosphorylases [53167] (2 families)
   complex architecture; contains mixed beta-sheet of 8 strands, order 23415867, strands 3, 6 & 7 are antiparallel to the rest; and barrel, closed; n=5, S=8

5. Family c.56.2.0: automated matches [191488] (1 protein)
   not a true family

6. Protein automated matches [190781] (46 species)
   not a true protein

7. Species Porphyromonas gingivalis [TaxId:431947] [230181] (2 PDB entries)

8. Domain d4ns1b1: 4ns1 B:16-288 [230182]
   Other proteins in same PDB: d4ns1b2, d4ns1d2
   automated match to d1lvuc_
   complexed with da, gol, so4

Details for d4ns1b1

PDB Entry: 4ns1, 1.64 Å

PDB Description: crystal structure of purine nucleoside phosphorylase from porphyromonas gingivalis atcc 33277, nysgrc target 30972

PDB Compounds: (B:) purine nucleoside phosphorylase

SCOPe Domain Sequences for d4ns1b1:

Sequence, based on SEQRES records:

>d4ns1b1 c.56.2.0 (B:16-288) automated matches {Porphyromonas gingivalis [TaxId: 431947]}
mklqeqhyheaasflssrlpgdaktaiilgsglgelaekienktvipyneiphfaqatav
ghkgniiggilggtpvvamqgrfhyyegysmdqvtfpirvmkllgienlfvsnaaggint
sfkvgdlmiicdhinnlpnpligpnmdmfgvrfpdmtraydrefiakakgiaqelnipvk
egvyvgltgpsyetpaeykfwgqvggdaigmstvpevivarhtgirvfgmsvitnegyhf
addfvndeqdviraanaasekmgaifarliaav

Sequence, based on observed residues (ATOM records):

>d4ns1b1 c.56.2.0 (B:16-288) automated matches {Porphyromonas gingivalis [TaxId: 431947]}
mklqeqhyheaasflssrlpgdaktaiilgsglgelaekienktvipyneiphfaqakgn
iiggilggtpvvamqgrfhyyegysmdqvtfpirvmkllgienlfvsnaaggintsfkvg
dlmiicdhinnlpnpligpnmdmfgvrfpdmtraydrefiakakgiaqelnipvkegvyv
gltgpsyetpaeykfwgqvggdaigmstvpevivarhtgirvfgmsvitnegyhfaddfv
ndeqdviraanaasekmgaifarliaav

Timeline for d4ns1b1:

• d4ns1b1 first appeared in SCOPe 2.03, called d4ns1b_
  
• d4ns1b1 appears in SCOPe 2.07