Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2384842Fold b.42: beta-Trefoil [50352] (8 superfamilies)
    barrel, closed; n=6, S=12; and a hairpin triplet; meander
    duplication: has internal pseudo threefold symmetry
  4. 2385622Superfamily b.42.4: STI-like [50386] (3 families) (S)
  5. 2385683Family b.42.4.2: Clostridium neurotoxins, C-terminal domain [50399] (3 proteins)
    overall fold is very similar to that of the STI family
    automatically mapped to Pfam PF07951
  6. 2385726Protein automated matches [229100] (5 species)
    not a true protein

Species:

  1. 2385727Clostridium botulinum [TaxId:1491] [229101] (14 PDB entries)
    1. Domain for 2vua:
    2. Domain for 3fuo:
    3. Domains for 4jra:
      1. 2385735Domain d4jraa2: 4jra A:1080-1296 [229104]
        Other proteins in same PDB: d4jraa1, d4jrab1
        automated match to d3btaa2
        complexed with cl, na
      2. 2385736Domain d4jrab2: 4jra B:1080-1296 [229102]
        Other proteins in same PDB: d4jraa1, d4jrab1
        automated match to d3btaa2
        complexed with cl, na
    4. Domains for 5jlv:
      1. 2385732Domain d5jlva2: 5jlv A:1093-1296 [318575]
        Other proteins in same PDB: d5jlva1, d5jlva3, d5jlvb1, d5jlvb3
        automated match to d3btaa2
        complexed with act, bma, fuc, nag, po4
      2. 2385733Domain d5jlvb2: 5jlv B:1093-1296 [318533]
        Other proteins in same PDB: d5jlva1, d5jlva3, d5jlvb1, d5jlvb3
        automated match to d3btaa2
        complexed with act, bma, fuc, nag, po4
    5. Domains for 5jmc:
      1. 2385740Domain d5jmca2: 5jmc A:1093-1296 [318553]
        Other proteins in same PDB: d5jmca1, d5jmca3, d5jmca4, d5jmcc1, d5jmcc3, d5jmcc4, d5jmce1, d5jmce3, d5jmce4, d5jmcg1, d5jmcg3, d5jmcg4
        automated match to d3btaa2
      2. 2385741Domain d5jmcc2: 5jmc C:1093-1296 [318569]
        Other proteins in same PDB: d5jmca1, d5jmca3, d5jmca4, d5jmcc1, d5jmcc3, d5jmcc4, d5jmce1, d5jmce3, d5jmce4, d5jmcg1, d5jmcg3, d5jmcg4
        automated match to d3btaa2
      3. 2385742Domain d5jmce2: 5jmc E:1093-1296 [318548]
        Other proteins in same PDB: d5jmca1, d5jmca3, d5jmca4, d5jmcc1, d5jmcc3, d5jmcc4, d5jmce1, d5jmce3, d5jmce4, d5jmcg1, d5jmcg3, d5jmcg4
        automated match to d3btaa2
      4. 2385743Domain d5jmcg2: 5jmc G:1093-1296 [318563]
        Other proteins in same PDB: d5jmca1, d5jmca3, d5jmca4, d5jmcc1, d5jmcc3, d5jmcc4, d5jmce1, d5jmce3, d5jmce4, d5jmcg1, d5jmcg3, d5jmcg4
        automated match to d3btaa2
    6. Domain for 5mk6:
    7. Domain for 5mk7:
    8. Domains for 5mk8:
      1. 3046639Domain d5mk8b2: 5mk8 B:1072-1287 [346701]
        Other proteins in same PDB: d5mk8a1, d5mk8b1
        automated match to d5v38a2
        complexed with cl, fmt
      2. 3046873Domain d5mk8a2: 5mk8 A:1072-1288 [346935]
        Other proteins in same PDB: d5mk8a1, d5mk8b1
        automated match to d5v38a2
        complexed with cl, fmt
    9. Domain for 5moy:
    10. Domains for 5tpb:
      1. 2385738Domain d5tpba2: 5tpb A:1080-1296 [328800]
        Other proteins in same PDB: d5tpba1, d5tpba3, d5tpba4, d5tpbb1, d5tpbb3
        automated match to d2vuaa2
        complexed with gal, nga, sia
      2. 2385739Domain d5tpbb2: 5tpb B:1080-1296 [328764]
        Other proteins in same PDB: d5tpba1, d5tpba3, d5tpba4, d5tpbb1, d5tpbb3
        automated match to d2vuaa2
        complexed with gal, nga, sia
    11. Domain for 5tpc:
    12. Domains for 5v38:
      1. 2385730Domain d5v38a2: 5v38 A:1072-1288 [332250]
        Other proteins in same PDB: d5v38a1, d5v38b1
        automated match to d2vuaa2
        complexed with acy
      2. 2385731Domain d5v38b2: 5v38 B:1072-1288 [332280]
        Other proteins in same PDB: d5v38a1, d5v38b1
        automated match to d2vuaa2
        complexed with acy
    13. Domain for 6es1:
    14. Domain for 6f0p:
  2. 2385744Clostridium botulinum [TaxId:36826] [231346] (1 PDB entry)
  3. 2385746Clostridium botulinum [TaxId:441771] [337544] (1 PDB entry)
  4. 2385748Clostridium tetani [TaxId:1513] [232493] (2 PDB entries)
    1. Domain for 3hmy:
    2. Domain for 3hn1:
  5. 3050391Clostridium botulinum [TaxId:498214] [350453] (1 PDB entry)

More info for Protein automated matches from b.42.4.2: Clostridium neurotoxins, C-terminal domain

Timeline for Protein automated matches from b.42.4.2: Clostridium neurotoxins, C-terminal domain: