SCOPe 2.03: Domain d3vx0a1: 3vx0 A:1-381

Lineage for d3vx0a1 (3vx0 A:1-381)

1. Root: SCOPe 2.03

2. Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.8: (Trans)glycosidases [51445] (15 families)

5. Family c.1.8.1: Amylase, catalytic domain [51446] (26 proteins)
   members of the family may contain various insert subdomains
   in alpha-amylases and closer relatives this domain is usually followed by a common all-beta domain

6. Protein Fungal alpha-amylases [51462] (2 species)

7. Species Aspergillus oryzae, Taka-amylase [TaxId:5062] [51464] (8 PDB entries)

8. Domain d3vx0a1: 3vx0 A:1-381 [227907]
   Other proteins in same PDB: d3vx0a2
   automated match to d2guya2
   complexed with ca, gd, nag

Details for d3vx0a1

PDB Entry: 3vx0, 1.5 Å

PDB Description: crystal structure of alpha-amylase from aspergillus oryzae

PDB Compounds: (A:) Alpha-amylase A type-1/2

SCOPe Domain Sequences for d3vx0a1:

Sequence; same for both SEQRES and ATOM records:

>d3vx0a1 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus oryzae, Taka-amylase [TaxId: 5062]}
atpadwrsqsiyflltdrfartdgsttatcntadqkycggtwqgiidkldyiqgmgftai
witpvtaqlpqttaygdayhgywqqdiyslnenygtaddlkalssalhergmylmvdvva
nhmgydgagssvdysvfkpfssqdyfhpfcfiqnyedqtqvedcwlgdntvslpdldttk
dvvknewydwvgslvsnysidglridtvkhvqkdfwpgynkaagvycigevldgdpaytc
pyqnvmdgvlnypiyypllnafkstsgsmddlynmintvksdcpdstllgtfvenhdnpr
fasytndialaknvaafiilndgipiiyagqeqhyaggndpanreatwlsgyptdselyk
liasanairnyaiskdtgfvt

Timeline for d3vx0a1:

• d3vx0a1 is new in SCOPe 2.03-stable
  
• d3vx0a1 appears in SCOPe 2.04
  
• d3vx0a1 appears in the current release, SCOPe 2.08