SCOPe 2.05: Domain d4kdme_: 4kdm E:

Lineage for d4kdme_ (4kdm E:)

1. Root: SCOPe 2.05

2. Class b: All beta proteins [48724] (176 folds)

3. Fold b.19: Viral protein domain [49817] (1 superfamily)
   sandwich; 9 strands in 2 sheets; jelly-roll; form trimers

4. Superfamily b.19.1: Viral protein domain [49818] (4 families)
   forms homotrimers

5. Family b.19.1.2: Influenza hemagglutinin headpiece [49823] (2 proteins)

6. Protein Hemagglutinin [49824] (7 species)
   includes rudiment esterase domain

7. Species Influenza A virus, different strains [TaxId:11320] [49825] (105 PDB entries)

8. Domain d4kdme_: 4kdm E: [227554]
   Other proteins in same PDB: d4kdmb_, d4kdmd_, d4kdmf_
   automated match to d4kpsa_
   complexed with nag

Details for d4kdme_

PDB Entry: 4kdm, 2.5 Å

PDB Description: crystal structure of the hemagglutinin of ferret-transmissible h5n1 virus

PDB Compounds: (E:) Hemagglutinin

SCOPe Domain Sequences for d4kdme_:

Sequence; same for both SEQRES and ATOM records:

>d4kdme_ b.19.1.2 (E:) Hemagglutinin {Influenza A virus, different strains [TaxId: 11320]}
qdqicigyhannsteqvdtimeknvtvthaqdilekkhngklcdldgvkplilrdcsvag
wllgnpmcdefinvpewsyivekanpvndlcypgdfndyeelkhllsrinhfekiqiipk
sswssheaslgvssacpyqgkssffrnvvwlikkdstyptikrsynntnqedllvlwgih
hpndaaeqtklyqnpttyisvgtstlnqrlvpriatrskvkglsgrmeffwtilkpndai
nfesngnfiapeyaykivkkgdstimkseleygncntkcqtpmgainssmpfhnihplti
gecpkyvksnrlvlaiglrnsp

Timeline for d4kdme_:

• d4kdme_ first appeared in SCOPe 2.03
  
• d4kdme_ appears in SCOPe 2.04
  
• d4kdme_ is called d4kdme1 in SCOPe 2.06
  
• d4kdme_ appears in the current release, SCOPe 2.08, called d4kdme1