SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites

Superfamily c.1.14: RuBisCo, C-terminal domain [51649] (2 families)
automatically mapped to Pfam PF00016
Family c.1.14.0: automated matches [227297] (1 protein)
not a true family
Protein automated matches [227123] (9 species)
not a true protein

Species:

Alicyclobacillus acidocaldarius [TaxId:521098] [229001] (1 PDB entry)
- Domains for 4nas:
  1. Domain d4nasa2: 4nas A:123-408 [229003]
    Other proteins in same PDB: d4nasa1, d4nasb1, d4nasc1, d4nasd1
    automated match to d3a12a2
    complexed with ca, cl, fmt, gol
  2. Domain d4nasb2: 4nas B:123-408 [235748]
    Other proteins in same PDB: d4nasa1, d4nasb1, d4nasc1, d4nasd1
    automated match to d4nasa2
    complexed with ca, cl, fmt, gol
  3. Domain d4nasc2: 4nas C:123-408 [235750]
    Other proteins in same PDB: d4nasa1, d4nasb1, d4nasc1, d4nasd1
    automated match to d4nasa2
    complexed with ca, cl, fmt, gol
  4. Domain d4nasd2: 4nas D:123-407 [229004]
    Other proteins in same PDB: d4nasa1, d4nasb1, d4nasc1, d4nasd1
    automated match to d3a12a2
    complexed with ca, cl, fmt, gol
Bacillus cereus [TaxId:226900] [232179] (1 PDB entry)
- Domains for 3fk4:
  1. Domain d3fk4a2: 3fk4 A:122-406 [232181]
    Other proteins in same PDB: d3fk4a1, d3fk4b1
    automated match to d4nasa2
  2. Domain d3fk4b2: 3fk4 B:122-406 [232180]
    Other proteins in same PDB: d3fk4a1, d3fk4b1
    automated match to d4nasa2
Bacillus subtilis [TaxId:1423] [231736] (1 PDB entry)
- Domains for 2zvi:
  1. Domain d2zvia2: 2zvi A:124-410 [231743]
    Other proteins in same PDB: d2zvia1, d2zvia3, d2zvib1, d2zvib3, d2zvic1, d2zvic3, d2zvid1, d2zvid3
    automated match to d4nasa2
  2. Domain d2zvib2: 2zvi B:124-411 [231737]
    Other proteins in same PDB: d2zvia1, d2zvia3, d2zvib1, d2zvib3, d2zvic1, d2zvic3, d2zvid1, d2zvid3
    automated match to d4nasa2
  3. Domain d2zvic2: 2zvi C:124-409 [231741]
    Other proteins in same PDB: d2zvia1, d2zvia3, d2zvib1, d2zvib3, d2zvic1, d2zvic3, d2zvid1, d2zvid3
    automated match to d4nasa2
  4. Domain d2zvid2: 2zvi D:124-413 [231740]
    Other proteins in same PDB: d2zvia1, d2zvia3, d2zvib1, d2zvib3, d2zvic1, d2zvic3, d2zvid1, d2zvid3
    automated match to d4nasa2
Candidatus promineofilum [TaxId:1806508] [392409] (1 PDB entry)
- Domains for 6ura:
  1. Domain d6uraa2: 6ura A:152-463 [392410]
    Other proteins in same PDB: d6uraa1, d6urab1, d6urac1, d6urad1
    automated match to d4ruba1
    complexed with cap, mg
  2. Domain d6urab2: 6ura B:152-463 [392436]
    Other proteins in same PDB: d6uraa1, d6urab1, d6urac1, d6urad1
    automated match to d4ruba1
    complexed with cap, mg
  3. Domain d6urac2: 6ura C:152-463 [392415]
    Other proteins in same PDB: d6uraa1, d6urab1, d6urac1, d6urad1
    automated match to d4ruba1
    complexed with cap, mg
  4. Domain d6urad2: 6ura D:152-463 [392423]
    Other proteins in same PDB: d6uraa1, d6urab1, d6urac1, d6urad1
    automated match to d4ruba1
    complexed with cap, mg
Geobacillus kaustophilus [TaxId:1462] [231052] (4 PDB entries)
1. Domains for 2oej:
  1. Domain d2oeja2: 2oej A:121-413 [231061]
    Other proteins in same PDB: d2oeja1, d2oejb1
    automated match to d4nasa2
    complexed with po4; mutant
  2. Domain d2oejb2: 2oej B:121-413 [231057]
    Other proteins in same PDB: d2oeja1, d2oejb1
    automated match to d4nasa2
    complexed with po4; mutant
2. Domains for 2oek:
  1. Domain d2oeka2: 2oek A:121-413 [231059]
    Other proteins in same PDB: d2oeka1, d2oekb1
    automated match to d4nasa2
    complexed with mg
  2. Domain d2oekb2: 2oek B:121-413 [231058]
    Other proteins in same PDB: d2oeka1, d2oekb1
    automated match to d4nasa2
    complexed with mg
3. Domains for 2oel:
  1. Domain d2oela2: 2oel A:121-413 [231056]
    Other proteins in same PDB: d2oela1, d2oelb1
    automated match to d4nasa2
    complexed with co3, mg
  2. Domain d2oelb2: 2oel B:121-413 [231055]
    Other proteins in same PDB: d2oela1, d2oelb1
    automated match to d4nasa2
    complexed with co3, mg
4. Domain for 2oem:
  - Domain d2oemb2: 2oem B:121-413 [231060]
    Other proteins in same PDB: d2oema1, d2oemb1
    automated match to d4nasa2
    complexed with 1ae, mg
Hyperthermus butylicus [TaxId:415426] [370210] (1 PDB entry)
- Domain for 6hun:
  - Domain d6huna2: 6hun A:136-440 [370211]
    Other proteins in same PDB: d6huna1
    automated match to d3a12a2
    complexed with ca

Pyrococcus kodakaraensis [TaxId:69014] [226763] (2 PDB entries)

Domains for 3a13:

Domain d3a13a2: 3a13 A:136-444 [208062]
Other proteins in same PDB: d3a13a1, d3a13b1, d3a13c1, d3a13d1, d3a13e1, d3a13f1, d3a13g1, d3a13h1, d3a13i1, d3a13j1
automated match to d1bxna1
complexed with ca, cap, mg; mutant

Domain d3a13b2: 3a13 B:136-444 [208064]
Other proteins in same PDB: d3a13a1, d3a13b1, d3a13c1, d3a13d1, d3a13e1, d3a13f1, d3a13g1, d3a13h1, d3a13i1, d3a13j1
automated match to d1bxna1
complexed with ca, cap, mg; mutant

Domain d3a13c2: 3a13 C:136-444 [208066]
Other proteins in same PDB: d3a13a1, d3a13b1, d3a13c1, d3a13d1, d3a13e1, d3a13f1, d3a13g1, d3a13h1, d3a13i1, d3a13j1
automated match to d1bxna1
complexed with ca, cap, mg; mutant

Domain d3a13d2: 3a13 D:136-444 [208068]
Other proteins in same PDB: d3a13a1, d3a13b1, d3a13c1, d3a13d1, d3a13e1, d3a13f1, d3a13g1, d3a13h1, d3a13i1, d3a13j1
automated match to d1bxna1
complexed with ca, cap, mg; mutant

Domain d3a13e2: 3a13 E:136-444 [208070]
Other proteins in same PDB: d3a13a1, d3a13b1, d3a13c1, d3a13d1, d3a13e1, d3a13f1, d3a13g1, d3a13h1, d3a13i1, d3a13j1
automated match to d1bxna1
complexed with ca, cap, mg; mutant

Domain d3a13f2: 3a13 F:136-444 [208072]
Other proteins in same PDB: d3a13a1, d3a13b1, d3a13c1, d3a13d1, d3a13e1, d3a13f1, d3a13g1, d3a13h1, d3a13i1, d3a13j1
automated match to d1bxna1
complexed with ca, cap, mg; mutant

Domain d3a13g2: 3a13 G:136-444 [208074]
Other proteins in same PDB: d3a13a1, d3a13b1, d3a13c1, d3a13d1, d3a13e1, d3a13f1, d3a13g1, d3a13h1, d3a13i1, d3a13j1
automated match to d1bxna1
complexed with ca, cap, mg; mutant

Domain d3a13h2: 3a13 H:136-444 [208076]
Other proteins in same PDB: d3a13a1, d3a13b1, d3a13c1, d3a13d1, d3a13e1, d3a13f1, d3a13g1, d3a13h1, d3a13i1, d3a13j1
automated match to d1bxna1
complexed with ca, cap, mg; mutant

Domain d3a13i2: 3a13 I:136-444 [208078]
Other proteins in same PDB: d3a13a1, d3a13b1, d3a13c1, d3a13d1, d3a13e1, d3a13f1, d3a13g1, d3a13h1, d3a13i1, d3a13j1
automated match to d1bxna1
complexed with ca, cap, mg; mutant

Domain d3a13j2: 3a13 J:136-444 [208080]
Other proteins in same PDB: d3a13a1, d3a13b1, d3a13c1, d3a13d1, d3a13e1, d3a13f1, d3a13g1, d3a13h1, d3a13i1, d3a13j1
automated match to d1bxna1
complexed with ca, cap, mg; mutant

Domains for 3wqp:

Domain d3wqpa2: 3wqp A:136-444 [306810]
Other proteins in same PDB: d3wqpa1, d3wqpb1, d3wqpc1, d3wqpd1, d3wqpe1, d3wqpf1, d3wqpg1, d3wqph1, d3wqpi1, d3wqpj1
automated match to d3a13a2
complexed with cap, edo, mg; mutant

Domain d3wqpb2: 3wqp B:136-444 [306812]
Other proteins in same PDB: d3wqpa1, d3wqpb1, d3wqpc1, d3wqpd1, d3wqpe1, d3wqpf1, d3wqpg1, d3wqph1, d3wqpi1, d3wqpj1
automated match to d3a13a2
complexed with cap, edo, mg; mutant

Domain d3wqpc2: 3wqp C:136-444 [306814]
Other proteins in same PDB: d3wqpa1, d3wqpb1, d3wqpc1, d3wqpd1, d3wqpe1, d3wqpf1, d3wqpg1, d3wqph1, d3wqpi1, d3wqpj1
automated match to d3a13a2
complexed with cap, edo, mg; mutant

Domain d3wqpd2: 3wqp D:136-444 [306816]
Other proteins in same PDB: d3wqpa1, d3wqpb1, d3wqpc1, d3wqpd1, d3wqpe1, d3wqpf1, d3wqpg1, d3wqph1, d3wqpi1, d3wqpj1
automated match to d3a13a2
complexed with cap, edo, mg; mutant

Domain d3wqpe2: 3wqp E:136-444 [306818]
Other proteins in same PDB: d3wqpa1, d3wqpb1, d3wqpc1, d3wqpd1, d3wqpe1, d3wqpf1, d3wqpg1, d3wqph1, d3wqpi1, d3wqpj1
automated match to d3a13a2
complexed with cap, edo, mg; mutant

Domain d3wqpg2: 3wqp G:136-444 [306822]
Other proteins in same PDB: d3wqpa1, d3wqpb1, d3wqpc1, d3wqpd1, d3wqpe1, d3wqpf1, d3wqpg1, d3wqph1, d3wqpi1, d3wqpj1
automated match to d3a13a2
complexed with cap, edo, mg; mutant

Domain d3wqph2: 3wqp H:136-444 [306824]
Other proteins in same PDB: d3wqpa1, d3wqpb1, d3wqpc1, d3wqpd1, d3wqpe1, d3wqpf1, d3wqpg1, d3wqph1, d3wqpi1, d3wqpj1
automated match to d3a13a2
complexed with cap, edo, mg; mutant

Domain d3wqpi2: 3wqp I:136-444 [306826]
Other proteins in same PDB: d3wqpa1, d3wqpb1, d3wqpc1, d3wqpd1, d3wqpe1, d3wqpf1, d3wqpg1, d3wqph1, d3wqpi1, d3wqpj1
automated match to d3a13a2
complexed with cap, edo, mg; mutant

Domain d3wqpj2: 3wqp J:136-444 [306828]
Other proteins in same PDB: d3wqpa1, d3wqpb1, d3wqpc1, d3wqpd1, d3wqpe1, d3wqpf1, d3wqpg1, d3wqph1, d3wqpi1, d3wqpj1
automated match to d3a13a2
complexed with cap, edo, mg; mutant

Thermococcus kodakaraensis [TaxId:69014] [226770] (2 PDB entries)

Domains for 3kdn:

Domain d3kdna2: 3kdn A:136-444 [212304]
Other proteins in same PDB: d3kdna1, d3kdnb1, d3kdnc1, d3kdnd1, d3kdne1, d3kdnf1, d3kdng1, d3kdnh1, d3kdni1, d3kdnj1
automated match to d1bxna1
complexed with cap, mg; mutant

Domain d3kdnb2: 3kdn B:136-444 [212306]
Other proteins in same PDB: d3kdna1, d3kdnb1, d3kdnc1, d3kdnd1, d3kdne1, d3kdnf1, d3kdng1, d3kdnh1, d3kdni1, d3kdnj1
automated match to d1bxna1
complexed with cap, mg; mutant

Domain d3kdnc2: 3kdn C:136-444 [212308]
Other proteins in same PDB: d3kdna1, d3kdnb1, d3kdnc1, d3kdnd1, d3kdne1, d3kdnf1, d3kdng1, d3kdnh1, d3kdni1, d3kdnj1
automated match to d1bxna1
complexed with cap, mg; mutant

Domain d3kdnd2: 3kdn D:136-444 [212310]
Other proteins in same PDB: d3kdna1, d3kdnb1, d3kdnc1, d3kdnd1, d3kdne1, d3kdnf1, d3kdng1, d3kdnh1, d3kdni1, d3kdnj1
automated match to d1bxna1
complexed with cap, mg; mutant

Domain d3kdne2: 3kdn E:136-444 [212312]
Other proteins in same PDB: d3kdna1, d3kdnb1, d3kdnc1, d3kdnd1, d3kdne1, d3kdnf1, d3kdng1, d3kdnh1, d3kdni1, d3kdnj1
automated match to d1bxna1
complexed with cap, mg; mutant

Domain d3kdnf2: 3kdn F:136-444 [212314]
Other proteins in same PDB: d3kdna1, d3kdnb1, d3kdnc1, d3kdnd1, d3kdne1, d3kdnf1, d3kdng1, d3kdnh1, d3kdni1, d3kdnj1
automated match to d1bxna1
complexed with cap, mg; mutant

Domain d3kdng2: 3kdn G:136-444 [212316]
Other proteins in same PDB: d3kdna1, d3kdnb1, d3kdnc1, d3kdnd1, d3kdne1, d3kdnf1, d3kdng1, d3kdnh1, d3kdni1, d3kdnj1
automated match to d1bxna1
complexed with cap, mg; mutant

Domain d3kdnh2: 3kdn H:136-444 [212318]
Other proteins in same PDB: d3kdna1, d3kdnb1, d3kdnc1, d3kdnd1, d3kdne1, d3kdnf1, d3kdng1, d3kdnh1, d3kdni1, d3kdnj1
automated match to d1bxna1
complexed with cap, mg; mutant

Domain d3kdni2: 3kdn I:136-444 [212320]
Other proteins in same PDB: d3kdna1, d3kdnb1, d3kdnc1, d3kdnd1, d3kdne1, d3kdnf1, d3kdng1, d3kdnh1, d3kdni1, d3kdnj1
automated match to d1bxna1
complexed with cap, mg; mutant

Domain d3kdnj2: 3kdn J:136-444 [212322]
Other proteins in same PDB: d3kdna1, d3kdnb1, d3kdnc1, d3kdnd1, d3kdne1, d3kdnf1, d3kdng1, d3kdnh1, d3kdni1, d3kdnj1
automated match to d1bxna1
complexed with cap, mg; mutant

Domains for 3kdo:

Domain d3kdoa2: 3kdo A:136-444 [212324]
Other proteins in same PDB: d3kdoa1, d3kdob1, d3kdoc1, d3kdod1, d3kdoe1, d3kdof1, d3kdog1, d3kdoh1, d3kdoi1, d3kdoj1
automated match to d1bxna1
complexed with cap, mg; mutant

Domain d3kdob2: 3kdo B:136-444 [212326]
Other proteins in same PDB: d3kdoa1, d3kdob1, d3kdoc1, d3kdod1, d3kdoe1, d3kdof1, d3kdog1, d3kdoh1, d3kdoi1, d3kdoj1
automated match to d1bxna1
complexed with cap, mg; mutant

Domain d3kdoc2: 3kdo C:136-444 [212328]
Other proteins in same PDB: d3kdoa1, d3kdob1, d3kdoc1, d3kdod1, d3kdoe1, d3kdof1, d3kdog1, d3kdoh1, d3kdoi1, d3kdoj1
automated match to d1bxna1
complexed with cap, mg; mutant

Domain d3kdod2: 3kdo D:136-444 [212330]
Other proteins in same PDB: d3kdoa1, d3kdob1, d3kdoc1, d3kdod1, d3kdoe1, d3kdof1, d3kdog1, d3kdoh1, d3kdoi1, d3kdoj1
automated match to d1bxna1
complexed with cap, mg; mutant

Domain d3kdoe2: 3kdo E:136-444 [212332]
Other proteins in same PDB: d3kdoa1, d3kdob1, d3kdoc1, d3kdod1, d3kdoe1, d3kdof1, d3kdog1, d3kdoh1, d3kdoi1, d3kdoj1
automated match to d1bxna1
complexed with cap, mg; mutant

Domain d3kdof2: 3kdo F:136-444 [212334]
Other proteins in same PDB: d3kdoa1, d3kdob1, d3kdoc1, d3kdod1, d3kdoe1, d3kdof1, d3kdog1, d3kdoh1, d3kdoi1, d3kdoj1
automated match to d1bxna1
complexed with cap, mg; mutant

Domain d3kdog2: 3kdo G:136-444 [212336]
Other proteins in same PDB: d3kdoa1, d3kdob1, d3kdoc1, d3kdod1, d3kdoe1, d3kdof1, d3kdog1, d3kdoh1, d3kdoi1, d3kdoj1
automated match to d1bxna1
complexed with cap, mg; mutant

Domain d3kdoh2: 3kdo H:136-444 [212338]
Other proteins in same PDB: d3kdoa1, d3kdob1, d3kdoc1, d3kdod1, d3kdoe1, d3kdof1, d3kdog1, d3kdoh1, d3kdoi1, d3kdoj1
automated match to d1bxna1
complexed with cap, mg; mutant

Domain d3kdoi2: 3kdo I:136-444 [212340]
Other proteins in same PDB: d3kdoa1, d3kdob1, d3kdoc1, d3kdod1, d3kdoe1, d3kdof1, d3kdog1, d3kdoh1, d3kdoi1, d3kdoj1
automated match to d1bxna1
complexed with cap, mg; mutant

Domain d3kdoj2: 3kdo J:136-444 [212342]
Other proteins in same PDB: d3kdoa1, d3kdob1, d3kdoc1, d3kdod1, d3kdoe1, d3kdof1, d3kdog1, d3kdoh1, d3kdoi1, d3kdoj1
automated match to d1bxna1
complexed with cap, mg; mutant

Thermococcus kodakarensis [TaxId:69014] [311351] (1 PDB entry)

Domain for 3wqp:

Domain d3wqpf2: 3wqp F:136-444 [306820]
Other proteins in same PDB: d3wqpa1, d3wqpb1, d3wqpc1, d3wqpd1, d3wqpe1, d3wqpf1, d3wqpg1, d3wqph1, d3wqpi1, d3wqpj1
automated match to d3a13a2
complexed with cap, edo, mg; mutant

More info for Protein automated matches from c.1.14.0: automated matches

Timeline for Protein automated matches from c.1.14.0: automated matches:

Protein automated matches from c.1.14.0: automated matches first appeared in SCOPe 2.03
Protein automated matches from c.1.14.0: automated matches appears in SCOPe 2.07