SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2172288Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. 2177144Superfamily d.58.31: Methyl-coenzyme M reductase subunits [55088] (3 families) (S)
    each of the three different subunits, alpha, beta and gamma, contains this fold decorated with additional secondary structures
  5. 2177239Family d.58.31.0: automated matches [227271] (1 protein)
    not a true family
  6. 2177240Protein automated matches [227074] (4 species)
    not a true protein

Species:

  1. 2177241Methanothermobacter marburgensis [TaxId:145263] [226795] (1 PDB entry)
  2. 2177246Uncultured archaeon [TaxId:115547] [226262] (1 PDB entry)
  3. 2292072Methanotorris formicicus [TaxId:647171] [335373] (2 PDB entries)
    1. Domains for 5n28:
      1. 2292073Domain d5n28f_: 5n28 F: [335374]
        Other proteins in same PDB: d5n28b2, d5n28e2
        automated match to d1e6yc_
        complexed with com, f43, k, tp7
      2. 2292083Domain d5n28c_: 5n28 C: [335384]
        Other proteins in same PDB: d5n28b2, d5n28e2
        automated match to d1e6yc_
        complexed with com, f43, k, tp7
      3. 2292114Domain d5n28e1: 5n28 E:2-188 [335415]
        Other proteins in same PDB: d5n28b2, d5n28e2
        automated match to d1hbnb2
        complexed with com, f43, k, tp7
      4. 2292133Domain d5n28b1: 5n28 B:2-188 [335434]
        Other proteins in same PDB: d5n28b2, d5n28e2
        automated match to d1hbnb2
        complexed with com, f43, k, tp7
    2. Domain for 5n2a:
  4. 2292100Methanothermococcus thermolithotrophicus [TaxId:523845] [335401] (1 PDB entry)

More info for Protein automated matches from d.58.31.0: automated matches

Timeline for Protein automated matches from d.58.31.0: automated matches: