Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 2963580Fold d.92: Zincin-like [55485] (2 superfamilies)
    contains mixed beta sheet with connection over free side of the sheet
  4. 2965096Superfamily d.92.2: beta-N-acetylhexosaminidase-like domain [55545] (4 families) (S)
    contains similar fold but lacks its catalytic centre
  5. 2965198Family d.92.2.0: automated matches [227269] (1 protein)
    not a true family
  6. 2965199Protein automated matches [227062] (5 species)
    not a true protein

Species:

  1. 2965200Bacteroides thetaiotaomicron [TaxId:226186] [255267] (4 PDB entries)
    1. Domains for 2jiw:
      1. 2965201Domain d2jiwa3: 2jiw A:4-126 [148103]
        Other proteins in same PDB: d2jiwa1, d2jiwa2, d2jiwb1, d2jiwb2
        automated match to d2vvna3
        complexed with beu
      2. 2965202Domain d2jiwb3: 2jiw B:4-126 [148106]
        Other proteins in same PDB: d2jiwa1, d2jiwa2, d2jiwb1, d2jiwb2
        automated match to d2vvna3
        complexed with beu
    2. Domain for 2vvs:
    3. Domain for 2wzh:
    4. Domain for 4aiu:
  2. 2965206Clostridium perfringens [TaxId:1502] [255689] (3 PDB entries)
    1. Domains for 2xpk:
      1. 2965207Domain d2xpka1: 2xpk A:40-178 [244576]
        Other proteins in same PDB: d2xpka2, d2xpka3, d2xpkb2, d2xpkb3
        automated match to d2v5ca1
        complexed with z0m
      2. 2965208Domain d2xpkb1: 2xpk B:40-178 [244579]
        Other proteins in same PDB: d2xpka2, d2xpka3, d2xpkb2, d2xpkb3
        automated match to d2v5ca1
        complexed with z0m
    2. Domain for 5oxd:
    3. Domains for 7khv:
      1. 2965209Domain d7khva1: 7khv A:39-178 [394970]
        Other proteins in same PDB: d7khva2, d7khva3, d7khvb2, d7khvb3, d7khvc2, d7khvc3, d7khvd2, d7khvd3, d7khve2, d7khve3, d7khvf1, d7khvf2
        automated match to d2v5ca1
        complexed with ca, cl, so4, x1a
      2. 2965210Domain d7khvb1: 7khv B:40-178 [395001]
        Other proteins in same PDB: d7khva2, d7khva3, d7khvb2, d7khvb3, d7khvc2, d7khvc3, d7khvd2, d7khvd3, d7khve2, d7khve3, d7khvf1, d7khvf2
        automated match to d2v5ca1
        complexed with ca, cl, so4, x1a
      3. 2965211Domain d7khvc1: 7khv C:40-178 [395007]
        Other proteins in same PDB: d7khva2, d7khva3, d7khvb2, d7khvb3, d7khvc2, d7khvc3, d7khvd2, d7khvd3, d7khve2, d7khve3, d7khvf1, d7khvf2
        automated match to d2v5ca1
        complexed with ca, cl, so4, x1a
      4. 2965212Domain d7khvd1: 7khv D:40-178 [395058]
        Other proteins in same PDB: d7khva2, d7khva3, d7khvb2, d7khvb3, d7khvc2, d7khvc3, d7khvd2, d7khvd3, d7khve2, d7khve3, d7khvf1, d7khvf2
        automated match to d2v5ca1
        complexed with ca, cl, so4, x1a
      5. 2965213Domain d7khve1: 7khv E:39-178 [395194]
        Other proteins in same PDB: d7khva2, d7khva3, d7khvb2, d7khvb3, d7khvc2, d7khvc3, d7khvd2, d7khvd3, d7khve2, d7khve3, d7khvf1, d7khvf2
        automated match to d2v5ca1
        complexed with ca, cl, so4, x1a
  3. 2965215Escherichia coli [TaxId:83333] [399125] (1 PDB entry)
  4. 2965217Human (Homo sapiens) [TaxId:9606] [226074] (2 PDB entries)
    1. Domains for 3lmy:
      1. 2965219Domain d3lmya1: 3lmy A:54-199 [212944]
        Other proteins in same PDB: d3lmya2, d3lmyb2
        automated match to d2gjxa2
        complexed with cp6, nag, ndg, so4
      2. 2965220Domain d3lmyb1: 3lmy B:54-199 [212946]
        Other proteins in same PDB: d3lmya2, d3lmyb2
        automated match to d2gjxa2
        complexed with cp6, nag, ndg, so4
    2. Domain for 5bro:
  5. 2965221Streptomyces coelicolor [TaxId:1902] [237537] (3 PDB entries)
    1. Domains for 4c7d:
      1. 2965223Domain d4c7da1: 4c7d A:2-138 [237552]
        Other proteins in same PDB: d4c7da2, d4c7db2
        automated match to d1jaka2
        complexed with edo
      2. 2965224Domain d4c7db1: 4c7d B:1-138 [237550]
        Other proteins in same PDB: d4c7da2, d4c7db2
        automated match to d1jaka2
        complexed with edo
    2. Domains for 4c7f:
      1. 2965225Domain d4c7fa1: 4c7f A:1-138 [237551]
        Other proteins in same PDB: d4c7fa2, d4c7fb2
        automated match to d1jaka2
        complexed with edo, gc2
      2. 2965226Domain d4c7fb1: 4c7f B:2-138 [237549]
        Other proteins in same PDB: d4c7fa2, d4c7fb2
        automated match to d1jaka2
        complexed with edo, gc2
    3. Domain for 4c7g:

More info for Protein automated matches from d.92.2.0: automated matches

Timeline for Protein automated matches from d.92.2.0: automated matches: