Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2538746Fold d.129: TBP-like [55944] (11 superfamilies)
    beta-alpha-beta(4)-alpha
  4. 2538747Superfamily d.129.1: TATA-box binding protein-like [55945] (3 families) (S)
  5. 2538929Family d.129.1.0: automated matches [227265] (1 protein)
    not a true family
  6. 2538930Protein automated matches [227057] (4 species)
    not a true protein

Species:

  1. 2538931Fungus (Encephalitozoon cuniculi) [TaxId:6035] [232060] (3 PDB entries)
    1. Domains for 3eik:
      1. 2538932Domain d3eika1: 3eik A:20-113 [232061]
        automated match to d1ytba1
        complexed with edo
      2. 2538933Domain d3eika2: 3eik A:114-197 [232087]
        automated match to d1ytba2
        complexed with edo
      3. 2538934Domain d3eikb1: 3eik B:20-113 [232062]
        automated match to d1ytba1
        complexed with edo
      4. 2538935Domain d3eikb2: 3eik B:114-198 [232094]
        automated match to d1ytba2
        complexed with edo
    2. Domains for 3oc3:
      1. 2538940Domain d3oc3c1: 3oc3 C:19-113 [248158]
        automated match to d1ytba1
        complexed with mes
      2. 2538941Domain d3oc3c2: 3oc3 C:114-196 [248159]
        automated match to d1ytba2
        complexed with mes
      3. 2538942Domain d3oc3d1: 3oc3 D:19-113 [248160]
        automated match to d1ytba1
        complexed with mes
      4. 2538943Domain d3oc3d2: 3oc3 D:114-196 [248161]
        automated match to d1ytba2
        complexed with mes
    3. Domains for 3oci:
      1. 2538936Domain d3ocia1: 3oci A:19-113 [233067]
        automated match to d1ytba1
        complexed with edo
      2. 2538937Domain d3ocia2: 3oci A:114-197 [233068]
        automated match to d1ytba2
        complexed with edo
      3. 2538938Domain d3ocib1: 3oci B:19-113 [233069]
        automated match to d1ytba1
        complexed with edo
      4. 2538939Domain d3ocib2: 3oci B:114-198 [233070]
        automated match to d1ytba2
        complexed with edo
  2. 2538944Human (Homo sapiens) [TaxId:9606] [226065] (1 PDB entry)
  3. 2538946Thale cress (Arabidopsis thaliana) [TaxId:3702] [230343] (2 PDB entries)
    1. Domains for 1vtl:
      1. 2538951Domain d1vtle1: 1vtl E:13-106 [230344]
        automated match to d1mp9a1
        protein/DNA complex
      2. 2538952Domain d1vtle2: 1vtl E:107-198 [230345]
        automated match to d1mp9a2
        protein/DNA complex
      3. 2538953Domain d1vtlf1: 1vtl F:13-106 [230346]
        automated match to d1mp9a1
        protein/DNA complex
      4. 2538954Domain d1vtlf2: 1vtl F:107-198 [230347]
        automated match to d1mp9a2
        protein/DNA complex
    2. Domains for 1vto:
      1. 2538947Domain d1vtoa1: 1vto A:12-106 [230348]
        automated match to d1mp9a1
        protein/DNA complex
      2. 2538948Domain d1vtoa2: 1vto A:107-198 [230349]
        automated match to d1mp9a2
        protein/DNA complex
      3. 2538949Domain d1vtob1: 1vto B:1011-1106 [230350]
        automated match to d1mp9a1
        protein/DNA complex
      4. 2538950Domain d1vtob2: 1vto B:1107-1198 [230351]
        automated match to d1mp9a2
        protein/DNA complex
  4. 3060546Mus musculus [TaxId:10090] [360608] (3 PDB entries)
    1. Domains for 6g3x:
      1. 3060547Domain d6g3xa1: 6g3x A:11-135 [360609]
        Other proteins in same PDB: d6g3xa2, d6g3xa3, d6g3xb2, d6g3xb3, d6g3xc2, d6g3xc3
        automated match to d2xhia1
        complexed with ni
      2. 3060557Domain d6g3xb1: 6g3x B:11-135 [360619]
        Other proteins in same PDB: d6g3xa2, d6g3xa3, d6g3xb2, d6g3xb3, d6g3xc2, d6g3xc3
        automated match to d2xhia1
        complexed with ni
      3. 3060604Domain d6g3xc1: 6g3x C:11-135 [360666]
        Other proteins in same PDB: d6g3xa2, d6g3xa3, d6g3xb2, d6g3xb3, d6g3xc2, d6g3xc3
        automated match to d2xhia1
        complexed with ni
    2. Domains for 6g3y:
      1. 3060564Domain d6g3ya1: 6g3y A:10-135 [360626]
        Other proteins in same PDB: d6g3ya2, d6g3yb2, d6g3yc2, d6g3yc3
        automated match to d2xhia1
        protein/DNA complex; complexed with act, elb, ni
      2. 3060580Domain d6g3yc1: 6g3y C:9-135 [360642]
        Other proteins in same PDB: d6g3ya2, d6g3yb2, d6g3yc2, d6g3yc3
        automated match to d2xhia1
        protein/DNA complex; complexed with act, elb, ni
      3. 3060642Domain d6g3yb1: 6g3y B:10-135 [360704]
        Other proteins in same PDB: d6g3ya2, d6g3yb2, d6g3yc2, d6g3yc3
        automated match to d2xhia1
        protein/DNA complex; complexed with act, elb, ni
    3. Domains for 6g40:
      1. 3067365Domain d6g40b1: 6g40 B:10-135 [367427]
        Other proteins in same PDB: d6g40a2, d6g40b2, d6g40c2, d6g40c3
        automated match to d2xhia1
        protein/DNA complex; complexed with act, elk, ni, peg
      2. 3067419Domain d6g40a1: 6g40 A:10-135 [367481]
        Other proteins in same PDB: d6g40a2, d6g40b2, d6g40c2, d6g40c3
        automated match to d2xhia1
        protein/DNA complex; complexed with act, elk, ni, peg
      3. 3067550Domain d6g40c1: 6g40 C:9-135 [367612]
        Other proteins in same PDB: d6g40a2, d6g40b2, d6g40c2, d6g40c3
        automated match to d2xhia1
        protein/DNA complex; complexed with act, elk, ni, peg

More info for Protein automated matches from d.129.1.0: automated matches

Timeline for Protein automated matches from d.129.1.0: automated matches: