SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2055556Fold b.46: FMT C-terminal domain-like [50485] (1 superfamily)
    barrel, open; n*=6, S*=10; greek-key
  4. 2055557Superfamily b.46.1: FMT C-terminal domain-like [50486] (3 families) (S)
  5. 2055604Family b.46.1.0: automated matches [227262] (1 protein)
    not a true family
  6. 2055605Protein automated matches [227053] (7 species)
    not a true protein

Species:

  1. 2055606Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [226571] (2 PDB entries)
    1. Domains for 3rfo:
      1. 2055611Domain d3rfoa2: 3rfo A:205-311 [306449]
        Other proteins in same PDB: d3rfoa1, d3rfoa3, d3rfob1, d3rfob3, d3rfoc1, d3rfoc3, d3rfod1, d3rfod3
        automated match to d4iqfb2
        complexed with gol, pge, so4
      2. 2055612Domain d3rfob2: 3rfo B:205-312 [306452]
        Other proteins in same PDB: d3rfoa1, d3rfoa3, d3rfob1, d3rfob3, d3rfoc1, d3rfoc3, d3rfod1, d3rfod3
        automated match to d4iqfb2
        complexed with gol, pge, so4
      3. 2055613Domain d3rfoc2: 3rfo C:205-312 [306455]
        Other proteins in same PDB: d3rfoa1, d3rfoa3, d3rfob1, d3rfob3, d3rfoc1, d3rfoc3, d3rfod1, d3rfod3
        automated match to d4iqfb2
        complexed with gol, pge, so4
      4. 2055614Domain d3rfod2: 3rfo D:205-312 [306458]
        Other proteins in same PDB: d3rfoa1, d3rfoa3, d3rfob1, d3rfob3, d3rfoc1, d3rfoc3, d3rfod1, d3rfod3
        automated match to d4iqfb2
        complexed with gol, pge, so4
    2. Domains for 4iqf:
      1. 2055607Domain d4iqfa2: 4iqf A:205-311 [223313]
        Other proteins in same PDB: d4iqfa1, d4iqfa3, d4iqfb1, d4iqfb3, d4iqfc1, d4iqfc3, d4iqfd1, d4iqfd3
        automated match to d1fmta1
        complexed with gol, pg5, so4
      2. 2055608Domain d4iqfb2: 4iqf B:205-312 [223315]
        Other proteins in same PDB: d4iqfa1, d4iqfa3, d4iqfb1, d4iqfb3, d4iqfc1, d4iqfc3, d4iqfd1, d4iqfd3
        automated match to d1fmta1
        complexed with gol, pg5, so4
      3. 2055609Domain d4iqfc2: 4iqf C:205-312 [223317]
        Other proteins in same PDB: d4iqfa1, d4iqfa3, d4iqfb1, d4iqfb3, d4iqfc1, d4iqfc3, d4iqfd1, d4iqfd3
        automated match to d1fmta1
        complexed with gol, pg5, so4
      4. 2055610Domain d4iqfd2: 4iqf D:205-312 [223319]
        Other proteins in same PDB: d4iqfa1, d4iqfa3, d4iqfb1, d4iqfb3, d4iqfc1, d4iqfc3, d4iqfd1, d4iqfd3
        automated match to d1fmta1
        complexed with gol, pg5, so4
  2. 2055615Coxiella burnetii [TaxId:777] [226216] (1 PDB entry)
  3. 2055617Vibrio cholerae [TaxId:666] [226046] (1 PDB entry)
  4. 2055619Yersinia pestis [TaxId:632] [226111] (1 PDB entry)
  5. 2055621Zebrafish (Danio rerio) [TaxId:7955] [271467] (6 PDB entries)
    1. Domain for 4qpc:
    2. Domains for 4qpd:
      1. 2055625Domain d4qpda2: 4qpd A:204-308 [271468]
        Other proteins in same PDB: d4qpda1, d4qpdb1
        automated match to d2bw0a1
        complexed with peg, thg
      2. 2055626Domain d4qpdb2: 4qpd B:204-308 [271473]
        Other proteins in same PDB: d4qpda1, d4qpdb1
        automated match to d2bw0a1
        complexed with peg, thg
    3. Domain for 4r8v:
    4. Domain for 4ts4:
    5. Domain for 4tt8:
    6. Domain for 4tts:
  6. 2274491Escherichia coli [TaxId:656414] [317792] (1 PDB entry)
  7. 2285428Pseudomonas aeruginosa [TaxId:208964] [328729] (1 PDB entry)

More info for Protein automated matches from b.46.1.0: automated matches

Timeline for Protein automated matches from b.46.1.0: automated matches: