SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2034780Fold b.3: Prealbumin-like [49451] (7 superfamilies)
    sandwich; 7 strands in 2 sheets, greek-key
    variations: some members have additional 1-2 strands to common fold
  4. 2035756Superfamily b.3.6: Aromatic compound dioxygenase [49482] (2 families) (S)
  5. 2036175Family b.3.6.0: automated matches [227249] (1 protein)
    not a true family
  6. 2036176Protein automated matches [227026] (4 species)
    not a true protein

Species:

  1. 2036177Rhodococcus opacus [TaxId:37919] [225810] (11 PDB entries)
    1. Domains for 2boy:
      1. 2036181Domain d2boya_: 2boy A: [230536]
        automated match to d3hgia_
        complexed with bho, fe, lpp, mg
      2. 2036182Domain d2boyb_: 2boy B: [230537]
        automated match to d3hgia_
        complexed with bho, fe, lpp, mg
      3. 2036183Domain d2boyc_: 2boy C: [230538]
        automated match to d3hgia_
        complexed with bho, fe, lpp, mg
      4. 2036184Domain d2boyd_: 2boy D: [230539]
        automated match to d3hgia_
        complexed with bho, fe, lpp, mg
      5. 2036185Domain d2boye_: 2boy E: [230540]
        automated match to d3hgia_
        complexed with bho, fe, lpp, mg
      6. 2036186Domain d2boyf_: 2boy F: [230541]
        automated match to d3hgia_
        complexed with bho, fe, lpp, mg
      7. 2036187Domain d2boyg_: 2boy G: [230542]
        automated match to d3hgia_
        complexed with bho, fe, lpp, mg
      8. 2036188Domain d2boyh_: 2boy H: [230543]
        automated match to d3hgia_
        complexed with bho, fe, lpp, mg
    2. Domain for 3hgi:
    3. Domain for 3hhx:
    4. Domain for 3hhy:
    5. Domain for 3hj8:
    6. Domain for 3hjq:
    7. Domain for 3hjs:
    8. Domain for 3hkp:
    9. Domain for 3i4v:
    10. Domain for 3i4y:
    11. Domain for 3i51:
  2. 2281437Burkholderia vietnamiensis [TaxId:269482] [324738] (1 PDB entry)
  3. 2286603Burkholderia multivorans [TaxId:395019] [329904] (1 PDB entry)
  4. 2292191Burkholderia ambifaria [TaxId:398577] [335492] (1 PDB entry)

More info for Protein automated matches from b.3.6.0: automated matches

Timeline for Protein automated matches from b.3.6.0: automated matches: