SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2185755Fold d.96: T-fold [55619] (2 superfamilies)
    beta(2)-alpha(2)-beta(2); 2 layers: alpha/beta; antiparallel sheet 1234
    tunnel-shaped: its known members form wide oligomeric barrels different sizes
  4. 2185756Superfamily d.96.1: Tetrahydrobiopterin biosynthesis enzymes-like [55620] (5 families) (S)
    bind purine or pterin in topologically similar sites between subunits
  5. 2186309Family d.96.1.0: automated matches [227243] (1 protein)
    not a true family
  6. 2186310Protein automated matches [227009] (13 species)
    not a true protein

Species:

  1. 2186311Aspergillus flavus [TaxId:5059] [226800] (5 PDB entries)
    1. Domains for 2pes:
      1. 2186318Domain d2pesa1: 2pes A:1-136 [149445]
        automated match to d2yzca1
        complexed with aza, lu, pdc
      2. 2186319Domain d2pesa2: 2pes A:137-295 [149446]
        automated match to d2yzca2
        complexed with aza, lu, pdc
    2. Domains for 3l8w:
      1. 2186312Domain d3l8wa1: 3l8w A:1-136 [212758]
        automated match to d2yzca1
        complexed with 4po, na, xan
      2. 2186313Domain d3l8wa2: 3l8w A:137-295 [212759]
        automated match to d2yzca2
        complexed with 4po, na, xan
    3. Domains for 3l9g:
      1. 2186320Domain d3l9ga1: 3l9g A:1-136 [212762]
        automated match to d2yzca1
        complexed with cl, mrd, na, urc
      2. 2186321Domain d3l9ga2: 3l9g A:137-295 [212763]
        automated match to d2yzca2
        complexed with cl, mrd, na, urc
    4. Domains for 3lbg:
      1. 2186316Domain d3lbga1: 3lbg A:1-136 [212784]
        automated match to d2yzca1
        complexed with 8tx, edo, na, trs
      2. 2186317Domain d3lbga2: 3lbg A:137-295 [212785]
        automated match to d2yzca2
        complexed with 8tx, edo, na, trs
    5. Domains for 3ld4:
      1. 2186314Domain d3ld4a1: 3ld4 A:1-136 [212828]
        automated match to d2yzca1
        complexed with 8nx, edo, na
      2. 2186315Domain d3ld4a2: 3ld4 A:137-295 [212829]
        automated match to d2yzca2
        complexed with 8nx, edo, na
  2. 2186322Bacillus cereus [TaxId:1053183] [280391] (1 PDB entry)
  3. 2186331Bacillus fastidiosus [TaxId:1458] [273141] (2 PDB entries)
    1. Domains for 4r8x:
      1. 2186332Domain d4r8xa1: 4r8x A:3-154 [273144]
        Other proteins in same PDB: d4r8xa3, d4r8xb3, d4r8xc3, d4r8xd3
        automated match to d1j2ga1
      2. 2186333Domain d4r8xa2: 4r8x A:155-322 [273146]
        Other proteins in same PDB: d4r8xa3, d4r8xb3, d4r8xc3, d4r8xd3
        automated match to d1j2ga2
      3. 2186334Domain d4r8xb1: 4r8x B:3-154 [273148]
        Other proteins in same PDB: d4r8xa3, d4r8xb3, d4r8xc3, d4r8xd3
        automated match to d1j2ga1
      4. 2186335Domain d4r8xb2: 4r8x B:155-322 [273149]
        Other proteins in same PDB: d4r8xa3, d4r8xb3, d4r8xc3, d4r8xd3
        automated match to d1j2ga2
      5. 2186336Domain d4r8xc1: 4r8x C:3-154 [273145]
        Other proteins in same PDB: d4r8xa3, d4r8xb3, d4r8xc3, d4r8xd3
        automated match to d1j2ga1
      6. 2186337Domain d4r8xc2: 4r8x C:155-322 [273147]
        Other proteins in same PDB: d4r8xa3, d4r8xb3, d4r8xc3, d4r8xd3
        automated match to d1j2ga2
      7. 2186338Domain d4r8xd1: 4r8x D:3-154 [273142]
        Other proteins in same PDB: d4r8xa3, d4r8xb3, d4r8xc3, d4r8xd3
        automated match to d1j2ga1
      8. 2186339Domain d4r8xd2: 4r8x D:155-322 [273143]
        Other proteins in same PDB: d4r8xa3, d4r8xb3, d4r8xc3, d4r8xd3
        automated match to d1j2ga2
    2. Domains for 4r99:
      1. 2186340Domain d4r99a1: 4r99 A:3-154 [300610]
        Other proteins in same PDB: d4r99a3, d4r99a4, d4r99b3, d4r99b4, d4r99c3, d4r99d3, d4r99d4
        automated match to d4r8xa1
        complexed with so4
      2. 2186341Domain d4r99a2: 4r99 A:155-322 [300611]
        Other proteins in same PDB: d4r99a3, d4r99a4, d4r99b3, d4r99b4, d4r99c3, d4r99d3, d4r99d4
        automated match to d4r8xa2
        complexed with so4
      3. 2186342Domain d4r99b1: 4r99 B:3-154 [300614]
        Other proteins in same PDB: d4r99a3, d4r99a4, d4r99b3, d4r99b4, d4r99c3, d4r99d3, d4r99d4
        automated match to d4r8xa1
        complexed with so4
      4. 2186343Domain d4r99b2: 4r99 B:155-322 [300615]
        Other proteins in same PDB: d4r99a3, d4r99a4, d4r99b3, d4r99b4, d4r99c3, d4r99d3, d4r99d4
        automated match to d4r8xa2
        complexed with so4
      5. 2186344Domain d4r99c1: 4r99 C:3-154 [273150]
        Other proteins in same PDB: d4r99a3, d4r99a4, d4r99b3, d4r99b4, d4r99c3, d4r99d3, d4r99d4
        automated match to d1j2ga1
        complexed with so4
      6. 2186345Domain d4r99c2: 4r99 C:155-322 [273151]
        Other proteins in same PDB: d4r99a3, d4r99a4, d4r99b3, d4r99b4, d4r99c3, d4r99d3, d4r99d4
        automated match to d1j2ga2
        complexed with so4
      7. 2186346Domain d4r99d1: 4r99 D:3-154 [300619]
        Other proteins in same PDB: d4r99a3, d4r99a4, d4r99b3, d4r99b4, d4r99c3, d4r99d3, d4r99d4
        automated match to d4r8xa1
        complexed with so4
      8. 2186347Domain d4r99d2: 4r99 D:155-322 [300620]
        Other proteins in same PDB: d4r99a3, d4r99a4, d4r99b3, d4r99b4, d4r99c3, d4r99d3, d4r99d4
        automated match to d4r8xa2
        complexed with so4
  4. 2186348Burkholderia thailandensis [TaxId:271848] [311343] (1 PDB entry)
  5. 2186350Escherichia coli [311232] (1 PDB entry)
  6. 2186359Escherichia coli [TaxId:469008] [230194] (6 PDB entries)
    1. Domains for 3qn0:
      1. 2186383Domain d3qn0a_: 3qn0 A: [230195]
        automated match to d3i2ba_
        complexed with zn
      2. 2186384Domain d3qn0b_: 3qn0 B: [233337]
        automated match to d3qn0a_
        complexed with zn
      3. 2186385Domain d3qn0c_: 3qn0 C: [233338]
        automated match to d3qn0a_
        complexed with zn
      4. 2186386Domain d3qn0d_: 3qn0 D: [233339]
        automated match to d3qn0a_
        complexed with zn
      5. 2186387Domain d3qn0e_: 3qn0 E: [233340]
        automated match to d3qn0a_
        complexed with zn
      6. 2186388Domain d3qn0f_: 3qn0 F: [233341]
        automated match to d3qn0a_
        complexed with zn
    2. Domains for 3qn9:
      1. 2186389Domain d3qn9a_: 3qn9 A: [233342]
        automated match to d3qn0a_
        complexed with zn
      2. 2186390Domain d3qn9b_: 3qn9 B: [233343]
        automated match to d3qn0a_
        complexed with zn
    3. Domains for 3qna:
      1. 2186377Domain d3qnaa_: 3qna A: [233344]
        automated match to d3qn0a_
        complexed with bio, zn
      2. 2186378Domain d3qnab_: 3qna B: [262339]
        automated match to d2obab_
        complexed with bio, zn
      3. 2186379Domain d3qnac_: 3qna C: [262340]
        automated match to d2obab_
        complexed with bio, zn
      4. 2186380Domain d3qnad_: 3qna D: [262341]
        automated match to d2obab_
        complexed with bio, zn
      5. 2186381Domain d3qnae_: 3qna E: [262342]
        automated match to d2obab_
        complexed with bio, zn
      6. 2186382Domain d3qnaf_: 3qna F: [262343]
        automated match to d2obab_
        complexed with bio, zn
    4. Domains for 4ntk:
      1. 2186360Domain d4ntka_: 4ntk A: [259409]
        automated match to d3qnaa_
        complexed with act, zn, zsp
      2. 2186361Domain d4ntkc_: 4ntk C: [263222]
        automated match to d4ntka_
        complexed with act, zn, zsp
      3. 2186362Domain d4ntkd_: 4ntk D: [263223]
        automated match to d4ntka_
        complexed with act, zn, zsp
      4. 2186363Domain d4ntke_: 4ntk E: [263224]
        automated match to d4ntka_
        complexed with act, zn, zsp
      5. 2186364Domain d4ntkf_: 4ntk F: [263225]
        automated match to d4ntka_
        complexed with act, zn, zsp
    5. Domains for 4ntm:
      1. 2186371Domain d4ntma_: 4ntm A: [266982]
        automated match to d4ntka_
        complexed with 2k8, zn
      2. 2186372Domain d4ntmb_: 4ntm B: [266983]
        automated match to d4ntka_
        complexed with 2k8, zn
      3. 2186373Domain d4ntmc_: 4ntm C: [266984]
        automated match to d4ntka_
        complexed with 2k8, zn
      4. 2186374Domain d4ntmd_: 4ntm D: [266985]
        automated match to d4ntka_
        complexed with 2k8, zn
      5. 2186375Domain d4ntme_: 4ntm E: [266986]
        automated match to d4ntka_
        complexed with 2k8, zn
      6. 2186376Domain d4ntmf_: 4ntm F: [266987]
        automated match to d4ntka_
        complexed with 2k8, zn
    6. Domains for 4ntn:
      1. 2186365Domain d4ntna_: 4ntn A: [257999]
        automated match to d3qn9a_
        complexed with fmt, zn
      2. 2186366Domain d4ntnb_: 4ntn B: [263226]
        automated match to d4ntka_
        complexed with fmt, zn
      3. 2186367Domain d4ntnc_: 4ntn C: [263227]
        automated match to d4ntka_
        complexed with fmt, zn
      4. 2186368Domain d4ntnd_: 4ntn D: [259410]
        automated match to d3qn9a_
        complexed with fmt, zn
      5. 2186369Domain d4ntne_: 4ntn E: [263228]
        automated match to d4ntka_
        complexed with fmt, zn
      6. 2186370Domain d4ntnf_: 4ntn F: [263229]
        automated match to d4ntka_
        complexed with fmt, zn
  7. 2186391Escherichia coli [TaxId:83333] [257997] (1 PDB entry)
  8. 2186393Human (Homo sapiens) [TaxId:9606] [225725] (1 PDB entry)
  9. 2186406Pseudomonas aeruginosa [TaxId:287] [230992] (2 PDB entries)
    1. Domains for 2oba:
      1. 2186407Domain d2obaa1: 2oba A:2-118 [230994]
        Other proteins in same PDB: d2obaa2, d2obab2, d2obac2, d2obad2, d2obae2, d2obaf2
        automated match to d3i2ba_
        complexed with zn
      2. 2186408Domain d2obab1: 2oba B:2-118 [230995]
        Other proteins in same PDB: d2obaa2, d2obab2, d2obac2, d2obad2, d2obae2, d2obaf2
        automated match to d3i2ba_
        complexed with zn
      3. 2186409Domain d2obac1: 2oba C:2-118 [230993]
        Other proteins in same PDB: d2obaa2, d2obab2, d2obac2, d2obad2, d2obae2, d2obaf2
        automated match to d3i2ba_
        complexed with zn
      4. 2186410Domain d2obad1: 2oba D:2-118 [230996]
        Other proteins in same PDB: d2obaa2, d2obab2, d2obac2, d2obad2, d2obae2, d2obaf2
        automated match to d3i2ba_
        complexed with zn
      5. 2186411Domain d2obae1: 2oba E:2-118 [230997]
        Other proteins in same PDB: d2obaa2, d2obab2, d2obac2, d2obad2, d2obae2, d2obaf2
        automated match to d3i2ba_
        complexed with zn
      6. 2186412Domain d2obaf1: 2oba F:2-118 [230998]
        Other proteins in same PDB: d2obaa2, d2obab2, d2obac2, d2obad2, d2obae2, d2obaf2
        automated match to d3i2ba_
        complexed with zn
    2. Domain for 4aey:
  10. 2186414Pyrococcus horikoshii OT3 [TaxId:70601] [255116] (2 PDB entries)
    1. Domains for 2dj6:
      1. 2186415Domain d2dj6a_: 2dj6 A: [241575]
        automated match to d2obaa_
      2. 2186416Domain d2dj6b_: 2dj6 B: [241576]
        automated match to d2obaa_
      3. 2186417Domain d2dj6c_: 2dj6 C: [241577]
        automated match to d2obaa_
    2. Domains for 2dtt:
      1. 2186418Domain d2dtta_: 2dtt A: [241646]
        automated match to d2obaa_
        complexed with h4b
      2. 2186419Domain d2dttb_: 2dtt B: [241647]
        automated match to d2obaa_
        complexed with h4b
      3. 2186420Domain d2dttc_: 2dtt C: [241648]
        automated match to d2obaa_
        complexed with h4b
      4. 2186421Domain d2dttd_: 2dtt D: [241649]
        automated match to d2obaa_
        complexed with h4b
      5. 2186422Domain d2dtte_: 2dtt E: [241650]
        automated match to d2obaa_
        complexed with h4b
      6. 2186423Domain d2dttf_: 2dtt F: [241651]
        automated match to d2obaa_
        complexed with h4b
  11. 2186424Vibrio cholerae [TaxId:243277] [267860] (1 PDB entry)
  12. 2186429Yersinia pestis [TaxId:632] [311332] (1 PDB entry)
  13. 2284150Danio rerio [TaxId:7955] [327451] (2 PDB entries)
    1. Domains for 5ll1:
      1. 2285654Domain d5ll1c1: 5ll1 C:8-142 [328955]
        automated match to d4n9sa1
      2. 2285655Domain d5ll1c2: 5ll1 C:143-294 [328956]
        automated match to d4n9sa2
      3. 2285658Domain d5ll1a1: 5ll1 A:8-142 [328959]
        automated match to d4n9sa1
      4. 2285659Domain d5ll1a2: 5ll1 A:143-294 [328960]
        automated match to d4n9sa2
      5. 2285691Domain d5ll1f1: 5ll1 F:8-142 [328992]
        automated match to d4n9sa1
      6. 2285692Domain d5ll1f2: 5ll1 F:143-294 [328993]
        automated match to d4n9sa2
      7. 2285706Domain d5ll1g1: 5ll1 G:8-142 [329007]
        automated match to d4n9sa1
      8. 2285707Domain d5ll1g2: 5ll1 G:143-294 [329008]
        automated match to d4n9sa2
      9. 2285709Domain d5ll1h1: 5ll1 H:8-142 [329010]
        automated match to d4n9sa1
      10. 2285710Domain d5ll1h2: 5ll1 H:143-294 [329011]
        automated match to d4n9sa2
      11. 2285757Domain d5ll1b1: 5ll1 B:8-142 [329058]
        automated match to d4n9sa1
      12. 2285758Domain d5ll1b2: 5ll1 B:143-294 [329059]
        automated match to d4n9sa2
      13. 2285787Domain d5ll1d1: 5ll1 D:8-142 [329088]
        automated match to d4n9sa1
      14. 2285788Domain d5ll1d2: 5ll1 D:143-294 [329089]
        automated match to d4n9sa2
      15. 2285862Domain d5ll1e1: 5ll1 E:8-142 [329163]
        automated match to d4n9sa1
      16. 2285863Domain d5ll1e2: 5ll1 E:143-294 [329164]
        automated match to d4n9sa2
    2. Domains for 5m98:
      1. 2284151Domain d5m98a1: 5m98 A:8-142 [327452]
        automated match to d4n9sa1
      2. 2284152Domain d5m98a2: 5m98 A:143-294 [327453]
        automated match to d4n9sa2
      3. 2284154Domain d5m98c1: 5m98 C:8-142 [327455]
        automated match to d4n9sa1
      4. 2284155Domain d5m98c2: 5m98 C:143-294 [327456]
        automated match to d4n9sa2
      5. 2284157Domain d5m98h1: 5m98 H:8-142 [327458]
        automated match to d4n9sa1
      6. 2284158Domain d5m98h2: 5m98 H:143-294 [327459]
        automated match to d4n9sa2
      7. 2284173Domain d5m98d1: 5m98 D:8-142 [327474]
        automated match to d4n9sa1
      8. 2284174Domain d5m98d2: 5m98 D:143-294 [327475]
        automated match to d4n9sa2
      9. 2284207Domain d5m98e1: 5m98 E:8-142 [327508]
        automated match to d4n9sa1
      10. 2284208Domain d5m98e2: 5m98 E:143-294 [327509]
        automated match to d4n9sa2
      11. 2284209Domain d5m98b1: 5m98 B:8-142 [327510]
        automated match to d4n9sa1
      12. 2284210Domain d5m98b2: 5m98 B:143-294 [327511]
        automated match to d4n9sa2
      13. 2284219Domain d5m98g1: 5m98 G:8-142 [327520]
        automated match to d4n9sa1
      14. 2284220Domain d5m98g2: 5m98 G:143-294 [327521]
        automated match to d4n9sa2
      15. 2284241Domain d5m98f1: 5m98 F:8-142 [327542]
        automated match to d4n9sa1
      16. 2284242Domain d5m98f2: 5m98 F:143-294 [327543]
        automated match to d4n9sa2

More info for Protein automated matches from d.96.1.0: automated matches

Timeline for Protein automated matches from d.96.1.0: automated matches: