Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2185755Fold d.96: T-fold [55619] (2 superfamilies)
    beta(2)-alpha(2)-beta(2); 2 layers: alpha/beta; antiparallel sheet 1234
    tunnel-shaped: its known members form wide oligomeric barrels different sizes
  4. 2185756Superfamily d.96.1: Tetrahydrobiopterin biosynthesis enzymes-like [55620] (5 families) (S)
    bind purine or pterin in topologically similar sites between subunits
  5. 2186309Family d.96.1.0: automated matches [227243] (1 protein)
    not a true family
  6. 2186310Protein automated matches [227009] (13 species)
    not a true protein

Species:

  1. 2186311Aspergillus flavus [TaxId:5059] [226800] (5 PDB entries)
    1. Domains for 2pes:
      1. 2186318Domain d2pesa1: 2pes A:1-136 [149445]
        automated match to d2yzca1
        complexed with aza, lu, pdc
      2. 2186319Domain d2pesa2: 2pes A:137-295 [149446]
        automated match to d2yzca2
        complexed with aza, lu, pdc
    2. Domains for 3l8w:
      1. 2186312Domain d3l8wa1: 3l8w A:1-136 [212758]
        automated match to d2yzca1
        complexed with 4po, na, xan
      2. 2186313Domain d3l8wa2: 3l8w A:137-295 [212759]
        automated match to d2yzca2
        complexed with 4po, na, xan
    3. Domains for 3l9g:
      1. 2186320Domain d3l9ga1: 3l9g A:1-136 [212762]
        automated match to d2yzca1
        complexed with cl, mrd, na, urc
      2. 2186321Domain d3l9ga2: 3l9g A:137-295 [212763]
        automated match to d2yzca2
        complexed with cl, mrd, na, urc
    4. Domains for 3lbg:
      1. 2186316Domain d3lbga1: 3lbg A:1-136 [212784]
        automated match to d2yzca1
        complexed with 8tx, edo, na, trs
      2. 2186317Domain d3lbga2: 3lbg A:137-295 [212785]
        automated match to d2yzca2
        complexed with 8tx, edo, na, trs
    5. Domains for 3ld4:
      1. 2186314Domain d3ld4a1: 3ld4 A:1-136 [212828]
        automated match to d2yzca1
        complexed with 8nx, edo, na
      2. 2186315Domain d3ld4a2: 3ld4 A:137-295 [212829]
        automated match to d2yzca2
        complexed with 8nx, edo, na
  2. 2186322Bacillus cereus [TaxId:1053183] [280391] (1 PDB entry)
  3. 2186331Bacillus fastidiosus [TaxId:1458] [273141] (2 PDB entries)
    1. Domains for 4r8x:
      1. 2186332Domain d4r8xa1: 4r8x A:3-154 [273144]
        Other proteins in same PDB: d4r8xa3, d4r8xb3, d4r8xc3, d4r8xd3
        automated match to d1j2ga1
      2. 2186333Domain d4r8xa2: 4r8x A:155-322 [273146]
        Other proteins in same PDB: d4r8xa3, d4r8xb3, d4r8xc3, d4r8xd3
        automated match to d1j2ga2
      3. 2186334Domain d4r8xb1: 4r8x B:3-154 [273148]
        Other proteins in same PDB: d4r8xa3, d4r8xb3, d4r8xc3, d4r8xd3
        automated match to d1j2ga1
      4. 2186335Domain d4r8xb2: 4r8x B:155-322 [273149]
        Other proteins in same PDB: d4r8xa3, d4r8xb3, d4r8xc3, d4r8xd3
        automated match to d1j2ga2
      5. 2186336Domain d4r8xc1: 4r8x C:3-154 [273145]
        Other proteins in same PDB: d4r8xa3, d4r8xb3, d4r8xc3, d4r8xd3
        automated match to d1j2ga1
      6. 2186337Domain d4r8xc2: 4r8x C:155-322 [273147]
        Other proteins in same PDB: d4r8xa3, d4r8xb3, d4r8xc3, d4r8xd3
        automated match to d1j2ga2
      7. 2186338Domain d4r8xd1: 4r8x D:3-154 [273142]
        Other proteins in same PDB: d4r8xa3, d4r8xb3, d4r8xc3, d4r8xd3
        automated match to d1j2ga1
      8. 2186339Domain d4r8xd2: 4r8x D:155-322 [273143]
        Other proteins in same PDB: d4r8xa3, d4r8xb3, d4r8xc3, d4r8xd3
        automated match to d1j2ga2
    2. Domains for 4r99:
      1. 2186340Domain d4r99a1: 4r99 A:3-154 [300610]
        Other proteins in same PDB: d4r99a3, d4r99a4, d4r99b3, d4r99b4, d4r99c3, d4r99d3, d4r99d4
        automated match to d4r8xa1
        complexed with so4
      2. 2186341Domain d4r99a2: 4r99 A:155-322 [300611]
        Other proteins in same PDB: d4r99a3, d4r99a4, d4r99b3, d4r99b4, d4r99c3, d4r99d3, d4r99d4
        automated match to d4r8xa2
        complexed with so4
      3. 2186342Domain d4r99b1: 4r99 B:3-154 [300614]
        Other proteins in same PDB: d4r99a3, d4r99a4, d4r99b3, d4r99b4, d4r99c3, d4r99d3, d4r99d4
        automated match to d4r8xa1
        complexed with so4
      4. 2186343Domain d4r99b2: 4r99 B:155-322 [300615]
        Other proteins in same PDB: d4r99a3, d4r99a4, d4r99b3, d4r99b4, d4r99c3, d4r99d3, d4r99d4
        automated match to d4r8xa2
        complexed with so4
      5. 2186344Domain d4r99c1: 4r99 C:3-154 [273150]
        Other proteins in same PDB: d4r99a3, d4r99a4, d4r99b3, d4r99b4, d4r99c3, d4r99d3, d4r99d4
        automated match to d1j2ga1
        complexed with so4
      6. 2186345Domain d4r99c2: 4r99 C:155-322 [273151]
        Other proteins in same PDB: d4r99a3, d4r99a4, d4r99b3, d4r99b4, d4r99c3, d4r99d3, d4r99d4
        automated match to d1j2ga2
        complexed with so4
      7. 2186346Domain d4r99d1: 4r99 D:3-154 [300619]
        Other proteins in same PDB: d4r99a3, d4r99a4, d4r99b3, d4r99b4, d4r99c3, d4r99d3, d4r99d4
        automated match to d4r8xa1
        complexed with so4
      8. 2186347Domain d4r99d2: 4r99 D:155-322 [300620]
        Other proteins in same PDB: d4r99a3, d4r99a4, d4r99b3, d4r99b4, d4r99c3, d4r99d3, d4r99d4
        automated match to d4r8xa2
        complexed with so4
  4. 2186348Burkholderia thailandensis [TaxId:271848] [311343] (1 PDB entry)
  5. 2186350Escherichia coli [311232] (1 PDB entry)
  6. 2186359Escherichia coli [TaxId:469008] [230194] (6 PDB entries)
    1. Domains for 3qn0:
      1. 2186383Domain d3qn0a_: 3qn0 A: [230195]
        automated match to d3i2ba_
        complexed with zn
      2. 2186384Domain d3qn0b_: 3qn0 B: [233337]
        automated match to d3qn0a_
        complexed with zn
      3. 2186385Domain d3qn0c_: 3qn0 C: [233338]
        automated match to d3qn0a_
        complexed with zn
      4. 2186386Domain d3qn0d_: 3qn0 D: [233339]
        automated match to d3qn0a_
        complexed with zn
      5. 2186387Domain d3qn0e_: 3qn0 E: [233340]
        automated match to d3qn0a_
        complexed with zn
      6. 2186388Domain d3qn0f_: 3qn0 F: [233341]
        automated match to d3qn0a_
        complexed with zn
    2. Domains for 3qn9:
      1. 2186389Domain d3qn9a_: 3qn9 A: [233342]
        automated match to d3qn0a_
        complexed with zn
      2. 2186390Domain d3qn9b_: 3qn9 B: [233343]
        automated match to d3qn0a_
        complexed with zn
    3. Domains for 3qna:
      1. 2186377Domain d3qnaa_: 3qna A: [233344]
        automated match to d3qn0a_
        complexed with bio, zn
      2. 2186378Domain d3qnab_: 3qna B: [262339]
        automated match to d2obab_
        complexed with bio, zn
      3. 2186379Domain d3qnac_: 3qna C: [262340]
        automated match to d2obab_
        complexed with bio, zn
      4. 2186380Domain d3qnad_: 3qna D: [262341]
        automated match to d2obab_
        complexed with bio, zn
      5. 2186381Domain d3qnae_: 3qna E: [262342]
        automated match to d2obab_
        complexed with bio, zn
      6. 2186382Domain d3qnaf_: 3qna F: [262343]
        automated match to d2obab_
        complexed with bio, zn
    4. Domains for 4ntk:
      1. 2186360Domain d4ntka_: 4ntk A: [259409]
        automated match to d3qnaa_
        complexed with act, zn, zsp
      2. 2186361Domain d4ntkc_: 4ntk C: [263222]
        automated match to d4ntka_
        complexed with act, zn, zsp
      3. 2186362Domain d4ntkd_: 4ntk D: [263223]
        automated match to d4ntka_
        complexed with act, zn, zsp
      4. 2186363Domain d4ntke_: 4ntk E: [263224]
        automated match to d4ntka_
        complexed with act, zn, zsp
      5. 2186364Domain d4ntkf_: 4ntk F: [263225]
        automated match to d4ntka_
        complexed with act, zn, zsp
    5. Domains for 4ntm:
      1. 2186371Domain d4ntma_: 4ntm A: [266982]
        automated match to d4ntka_
        complexed with 2k8, zn
      2. 2186372Domain d4ntmb_: 4ntm B: [266983]
        automated match to d4ntka_
        complexed with 2k8, zn
      3. 2186373Domain d4ntmc_: 4ntm C: [266984]
        automated match to d4ntka_
        complexed with 2k8, zn
      4. 2186374Domain d4ntmd_: 4ntm D: [266985]
        automated match to d4ntka_
        complexed with 2k8, zn
      5. 2186375Domain d4ntme_: 4ntm E: [266986]
        automated match to d4ntka_
        complexed with 2k8, zn
      6. 2186376Domain d4ntmf_: 4ntm F: [266987]
        automated match to d4ntka_
        complexed with 2k8, zn
    6. Domains for 4ntn:
      1. 2186365Domain d4ntna_: 4ntn A: [257999]
        automated match to d3qn9a_
        complexed with fmt, zn
      2. 2186366Domain d4ntnb_: 4ntn B: [263226]
        automated match to d4ntka_
        complexed with fmt, zn
      3. 2186367Domain d4ntnc_: 4ntn C: [263227]
        automated match to d4ntka_
        complexed with fmt, zn
      4. 2186368Domain d4ntnd_: 4ntn D: [259410]
        automated match to d3qn9a_
        complexed with fmt, zn
      5. 2186369Domain d4ntne_: 4ntn E: [263228]
        automated match to d4ntka_
        complexed with fmt, zn
      6. 2186370Domain d4ntnf_: 4ntn F: [263229]
        automated match to d4ntka_
        complexed with fmt, zn
  7. 2186391Escherichia coli [TaxId:83333] [257997] (1 PDB entry)
  8. 2186393Human (Homo sapiens) [TaxId:9606] [225725] (1 PDB entry)
  9. 2186406Pseudomonas aeruginosa [TaxId:287] [230992] (2 PDB entries)
    1. Domains for 2oba:
      1. 2186407Domain d2obaa1: 2oba A:2-118 [230994]
        Other proteins in same PDB: d2obaa2, d2obab2, d2obac2, d2obad2, d2obae2, d2obaf2
        automated match to d3i2ba_
        complexed with zn
      2. 2186408Domain d2obab1: 2oba B:2-118 [230995]
        Other proteins in same PDB: d2obaa2, d2obab2, d2obac2, d2obad2, d2obae2, d2obaf2
        automated match to d3i2ba_
        complexed with zn
      3. 2186409Domain d2obac1: 2oba C:2-118 [230993]
        Other proteins in same PDB: d2obaa2, d2obab2, d2obac2, d2obad2, d2obae2, d2obaf2
        automated match to d3i2ba_
        complexed with zn
      4. 2186410Domain d2obad1: 2oba D:2-118 [230996]
        Other proteins in same PDB: d2obaa2, d2obab2, d2obac2, d2obad2, d2obae2, d2obaf2
        automated match to d3i2ba_
        complexed with zn
      5. 2186411Domain d2obae1: 2oba E:2-118 [230997]
        Other proteins in same PDB: d2obaa2, d2obab2, d2obac2, d2obad2, d2obae2, d2obaf2
        automated match to d3i2ba_
        complexed with zn
      6. 2186412Domain d2obaf1: 2oba F:2-118 [230998]
        Other proteins in same PDB: d2obaa2, d2obab2, d2obac2, d2obad2, d2obae2, d2obaf2
        automated match to d3i2ba_
        complexed with zn
    2. Domain for 4aey:
  10. 2186414Pyrococcus horikoshii OT3 [TaxId:70601] [255116] (2 PDB entries)
    1. Domains for 2dj6:
      1. 2186415Domain d2dj6a_: 2dj6 A: [241575]
        automated match to d2obaa_
      2. 2186416Domain d2dj6b_: 2dj6 B: [241576]
        automated match to d2obaa_
      3. 2186417Domain d2dj6c_: 2dj6 C: [241577]
        automated match to d2obaa_
    2. Domains for 2dtt:
      1. 2186418Domain d2dtta_: 2dtt A: [241646]
        automated match to d2obaa_
        complexed with h4b
      2. 2186419Domain d2dttb_: 2dtt B: [241647]
        automated match to d2obaa_
        complexed with h4b
      3. 2186420Domain d2dttc_: 2dtt C: [241648]
        automated match to d2obaa_
        complexed with h4b
      4. 2186421Domain d2dttd_: 2dtt D: [241649]
        automated match to d2obaa_
        complexed with h4b
      5. 2186422Domain d2dtte_: 2dtt E: [241650]
        automated match to d2obaa_
        complexed with h4b
      6. 2186423Domain d2dttf_: 2dtt F: [241651]
        automated match to d2obaa_
        complexed with h4b
  11. 2186424Vibrio cholerae [TaxId:243277] [267860] (1 PDB entry)
  12. 2186429Yersinia pestis [TaxId:632] [311332] (1 PDB entry)
  13. 2284150Danio rerio [TaxId:7955] [327451] (2 PDB entries)
    1. Domains for 5ll1:
      1. 2285654Domain d5ll1c1: 5ll1 C:8-142 [328955]
        automated match to d4n9sa1
      2. 2285655Domain d5ll1c2: 5ll1 C:143-294 [328956]
        automated match to d4n9sa2
      3. 2285658Domain d5ll1a1: 5ll1 A:8-142 [328959]
        automated match to d4n9sa1
      4. 2285659Domain d5ll1a2: 5ll1 A:143-294 [328960]
        automated match to d4n9sa2
      5. 2285691Domain d5ll1f1: 5ll1 F:8-142 [328992]
        automated match to d4n9sa1
      6. 2285692Domain d5ll1f2: 5ll1 F:143-294 [328993]
        automated match to d4n9sa2
      7. 2285706Domain d5ll1g1: 5ll1 G:8-142 [329007]
        automated match to d4n9sa1
      8. 2285707Domain d5ll1g2: 5ll1 G:143-294 [329008]
        automated match to d4n9sa2
      9. 2285709Domain d5ll1h1: 5ll1 H:8-142 [329010]
        automated match to d4n9sa1
      10. 2285710Domain d5ll1h2: 5ll1 H:143-294 [329011]
        automated match to d4n9sa2
      11. 2285757Domain d5ll1b1: 5ll1 B:8-142 [329058]
        automated match to d4n9sa1
      12. 2285758Domain d5ll1b2: 5ll1 B:143-294 [329059]
        automated match to d4n9sa2
      13. 2285787Domain d5ll1d1: 5ll1 D:8-142 [329088]
        automated match to d4n9sa1
      14. 2285788Domain d5ll1d2: 5ll1 D:143-294 [329089]
        automated match to d4n9sa2
      15. 2285862Domain d5ll1e1: 5ll1 E:8-142 [329163]
        automated match to d4n9sa1
      16. 2285863Domain d5ll1e2: 5ll1 E:143-294 [329164]
        automated match to d4n9sa2
    2. Domains for 5m98:
      1. 2284151Domain d5m98a1: 5m98 A:8-142 [327452]
        automated match to d4n9sa1
      2. 2284152Domain d5m98a2: 5m98 A:143-294 [327453]
        automated match to d4n9sa2
      3. 2284154Domain d5m98c1: 5m98 C:8-142 [327455]
        automated match to d4n9sa1
      4. 2284155Domain d5m98c2: 5m98 C:143-294 [327456]
        automated match to d4n9sa2
      5. 2284157Domain d5m98h1: 5m98 H:8-142 [327458]
        automated match to d4n9sa1
      6. 2284158Domain d5m98h2: 5m98 H:143-294 [327459]
        automated match to d4n9sa2
      7. 2284173Domain d5m98d1: 5m98 D:8-142 [327474]
        automated match to d4n9sa1
      8. 2284174Domain d5m98d2: 5m98 D:143-294 [327475]
        automated match to d4n9sa2
      9. 2284207Domain d5m98e1: 5m98 E:8-142 [327508]
        automated match to d4n9sa1
      10. 2284208Domain d5m98e2: 5m98 E:143-294 [327509]
        automated match to d4n9sa2
      11. 2284209Domain d5m98b1: 5m98 B:8-142 [327510]
        automated match to d4n9sa1
      12. 2284210Domain d5m98b2: 5m98 B:143-294 [327511]
        automated match to d4n9sa2
      13. 2284219Domain d5m98g1: 5m98 G:8-142 [327520]
        automated match to d4n9sa1
      14. 2284220Domain d5m98g2: 5m98 G:143-294 [327521]
        automated match to d4n9sa2
      15. 2284241Domain d5m98f1: 5m98 F:8-142 [327542]
        automated match to d4n9sa1
      16. 2284242Domain d5m98f2: 5m98 F:143-294 [327543]
        automated match to d4n9sa2

More info for Protein automated matches from d.96.1.0: automated matches

Timeline for Protein automated matches from d.96.1.0: automated matches: