Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2531295Fold d.96: T-fold [55619] (2 superfamilies)
    beta(2)-alpha(2)-beta(2); 2 layers: alpha/beta; antiparallel sheet 1234
    tunnel-shaped: its known members form wide oligomeric barrels different sizes
  4. 2531296Superfamily d.96.1: Tetrahydrobiopterin biosynthesis enzymes-like [55620] (5 families) (S)
    bind purine or pterin in topologically similar sites between subunits
  5. 2531860Family d.96.1.0: automated matches [227243] (1 protein)
    not a true family
  6. 2531861Protein automated matches [227009] (14 species)
    not a true protein

Species:

  1. 2531862Aspergillus flavus [TaxId:5059] [226800] (5 PDB entries)
    1. Domains for 2pes:
      1. 2531869Domain d2pesa1: 2pes A:1-136 [149445]
        automated match to d2yzca1
        complexed with aza, lu, pdc
      2. 2531870Domain d2pesa2: 2pes A:137-295 [149446]
        automated match to d2yzca2
        complexed with aza, lu, pdc
    2. Domains for 3l8w:
      1. 2531863Domain d3l8wa1: 3l8w A:1-136 [212758]
        automated match to d2yzca1
        complexed with 4po, na, xan
      2. 2531864Domain d3l8wa2: 3l8w A:137-295 [212759]
        automated match to d2yzca2
        complexed with 4po, na, xan
    3. Domains for 3l9g:
      1. 2531871Domain d3l9ga1: 3l9g A:1-136 [212762]
        automated match to d2yzca1
        complexed with cl, mrd, na, urc
      2. 2531872Domain d3l9ga2: 3l9g A:137-295 [212763]
        automated match to d2yzca2
        complexed with cl, mrd, na, urc
    4. Domains for 3lbg:
      1. 2531867Domain d3lbga1: 3lbg A:1-136 [212784]
        automated match to d2yzca1
        complexed with 8tx, edo, na, trs
      2. 2531868Domain d3lbga2: 3lbg A:137-295 [212785]
        automated match to d2yzca2
        complexed with 8tx, edo, na, trs
    5. Domains for 3ld4:
      1. 2531865Domain d3ld4a1: 3ld4 A:1-136 [212828]
        automated match to d2yzca1
        complexed with 8nx, edo, na
      2. 2531866Domain d3ld4a2: 3ld4 A:137-295 [212829]
        automated match to d2yzca2
        complexed with 8nx, edo, na
  2. 2531873Bacillus cereus [TaxId:1053183] [280391] (1 PDB entry)
  3. 2531882Bacillus fastidiosus [TaxId:1458] [273141] (2 PDB entries)
    1. Domains for 4r8x:
      1. 2531883Domain d4r8xa1: 4r8x A:3-154 [273144]
        Other proteins in same PDB: d4r8xa3, d4r8xb3, d4r8xc3, d4r8xd3
        automated match to d1j2ga1
      2. 2531884Domain d4r8xa2: 4r8x A:155-322 [273146]
        Other proteins in same PDB: d4r8xa3, d4r8xb3, d4r8xc3, d4r8xd3
        automated match to d1j2ga2
      3. 2531885Domain d4r8xb1: 4r8x B:3-154 [273148]
        Other proteins in same PDB: d4r8xa3, d4r8xb3, d4r8xc3, d4r8xd3
        automated match to d1j2ga1
      4. 2531886Domain d4r8xb2: 4r8x B:155-322 [273149]
        Other proteins in same PDB: d4r8xa3, d4r8xb3, d4r8xc3, d4r8xd3
        automated match to d1j2ga2
      5. 2531887Domain d4r8xc1: 4r8x C:3-154 [273145]
        Other proteins in same PDB: d4r8xa3, d4r8xb3, d4r8xc3, d4r8xd3
        automated match to d1j2ga1
      6. 2531888Domain d4r8xc2: 4r8x C:155-322 [273147]
        Other proteins in same PDB: d4r8xa3, d4r8xb3, d4r8xc3, d4r8xd3
        automated match to d1j2ga2
      7. 2531889Domain d4r8xd1: 4r8x D:3-154 [273142]
        Other proteins in same PDB: d4r8xa3, d4r8xb3, d4r8xc3, d4r8xd3
        automated match to d1j2ga1
      8. 2531890Domain d4r8xd2: 4r8x D:155-322 [273143]
        Other proteins in same PDB: d4r8xa3, d4r8xb3, d4r8xc3, d4r8xd3
        automated match to d1j2ga2
    2. Domains for 4r99:
      1. 2531891Domain d4r99a1: 4r99 A:3-154 [300610]
        Other proteins in same PDB: d4r99a3, d4r99a4, d4r99b3, d4r99b4, d4r99c3, d4r99d3, d4r99d4
        automated match to d4r8xa1
        complexed with so4
      2. 2531892Domain d4r99a2: 4r99 A:155-322 [300611]
        Other proteins in same PDB: d4r99a3, d4r99a4, d4r99b3, d4r99b4, d4r99c3, d4r99d3, d4r99d4
        automated match to d4r8xa2
        complexed with so4
      3. 2531893Domain d4r99b1: 4r99 B:3-154 [300614]
        Other proteins in same PDB: d4r99a3, d4r99a4, d4r99b3, d4r99b4, d4r99c3, d4r99d3, d4r99d4
        automated match to d4r8xa1
        complexed with so4
      4. 2531894Domain d4r99b2: 4r99 B:155-322 [300615]
        Other proteins in same PDB: d4r99a3, d4r99a4, d4r99b3, d4r99b4, d4r99c3, d4r99d3, d4r99d4
        automated match to d4r8xa2
        complexed with so4
      5. 2531895Domain d4r99c1: 4r99 C:3-154 [273150]
        Other proteins in same PDB: d4r99a3, d4r99a4, d4r99b3, d4r99b4, d4r99c3, d4r99d3, d4r99d4
        automated match to d1j2ga1
        complexed with so4
      6. 2531896Domain d4r99c2: 4r99 C:155-322 [273151]
        Other proteins in same PDB: d4r99a3, d4r99a4, d4r99b3, d4r99b4, d4r99c3, d4r99d3, d4r99d4
        automated match to d1j2ga2
        complexed with so4
      7. 2531897Domain d4r99d1: 4r99 D:3-154 [300619]
        Other proteins in same PDB: d4r99a3, d4r99a4, d4r99b3, d4r99b4, d4r99c3, d4r99d3, d4r99d4
        automated match to d4r8xa1
        complexed with so4
      8. 2531898Domain d4r99d2: 4r99 D:155-322 [300620]
        Other proteins in same PDB: d4r99a3, d4r99a4, d4r99b3, d4r99b4, d4r99c3, d4r99d3, d4r99d4
        automated match to d4r8xa2
        complexed with so4
  4. 2531899Burkholderia thailandensis [TaxId:271848] [311343] (1 PDB entry)
  5. 2531901Escherichia coli [311232] (2 PDB entries)
    1. Domain for 2o90:
    2. Domains for 2o9m:
      1. 2531903Domain d2o9ma_: 2o9m A: [304264]
        automated match to d3o1kb_
        complexed with ph2
      2. 2531904Domain d2o9mb_: 2o9m B: [304265]
        automated match to d3o1kb_
        complexed with ph2
      3. 2531905Domain d2o9mc_: 2o9m C: [304266]
        automated match to d3o1kb_
        complexed with ph2
      4. 2531906Domain d2o9md_: 2o9m D: [304267]
        automated match to d3o1kb_
        complexed with ph2
      5. 2531907Domain d2o9me_: 2o9m E: [304268]
        automated match to d3o1kb_
        complexed with ph2
      6. 2531908Domain d2o9mf_: 2o9m F: [304269]
        automated match to d3o1kb_
        complexed with ph2
      7. 2531909Domain d2o9mg_: 2o9m G: [304270]
        automated match to d3o1kb_
        complexed with ph2
      8. 2531910Domain d2o9mh_: 2o9m H: [304271]
        automated match to d3o1kb_
        complexed with ph2
  6. 2531911Escherichia coli [TaxId:469008] [230194] (6 PDB entries)
    1. Domains for 3qn0:
      1. 2531935Domain d3qn0a_: 3qn0 A: [230195]
        automated match to d3i2ba_
        complexed with zn
      2. 2531936Domain d3qn0b_: 3qn0 B: [233337]
        automated match to d3qn0a_
        complexed with zn
      3. 2531937Domain d3qn0c_: 3qn0 C: [233338]
        automated match to d3qn0a_
        complexed with zn
      4. 2531938Domain d3qn0d_: 3qn0 D: [233339]
        automated match to d3qn0a_
        complexed with zn
      5. 2531939Domain d3qn0e_: 3qn0 E: [233340]
        automated match to d3qn0a_
        complexed with zn
      6. 2531940Domain d3qn0f_: 3qn0 F: [233341]
        automated match to d3qn0a_
        complexed with zn
    2. Domains for 3qn9:
      1. 2531941Domain d3qn9a_: 3qn9 A: [233342]
        automated match to d3qn0a_
        complexed with zn
      2. 2531942Domain d3qn9b_: 3qn9 B: [233343]
        automated match to d3qn0a_
        complexed with zn
    3. Domains for 3qna:
      1. 2531929Domain d3qnaa_: 3qna A: [233344]
        automated match to d3qn0a_
        complexed with bio, zn
      2. 2531930Domain d3qnab_: 3qna B: [262339]
        automated match to d2obab_
        complexed with bio, zn
      3. 2531931Domain d3qnac_: 3qna C: [262340]
        automated match to d2obab_
        complexed with bio, zn
      4. 2531932Domain d3qnad_: 3qna D: [262341]
        automated match to d2obab_
        complexed with bio, zn
      5. 2531933Domain d3qnae_: 3qna E: [262342]
        automated match to d2obab_
        complexed with bio, zn
      6. 2531934Domain d3qnaf_: 3qna F: [262343]
        automated match to d2obab_
        complexed with bio, zn
    4. Domains for 4ntk:
      1. 2531912Domain d4ntka_: 4ntk A: [259409]
        automated match to d3qnaa_
        complexed with act, zn, zsp
      2. 2531913Domain d4ntkc_: 4ntk C: [263222]
        automated match to d4ntka_
        complexed with act, zn, zsp
      3. 2531914Domain d4ntkd_: 4ntk D: [263223]
        automated match to d4ntka_
        complexed with act, zn, zsp
      4. 2531915Domain d4ntke_: 4ntk E: [263224]
        automated match to d4ntka_
        complexed with act, zn, zsp
      5. 2531916Domain d4ntkf_: 4ntk F: [263225]
        automated match to d4ntka_
        complexed with act, zn, zsp
    5. Domains for 4ntm:
      1. 2531923Domain d4ntma_: 4ntm A: [266982]
        automated match to d4ntka_
        complexed with 2k8, zn
      2. 2531924Domain d4ntmb_: 4ntm B: [266983]
        automated match to d4ntka_
        complexed with 2k8, zn
      3. 2531925Domain d4ntmc_: 4ntm C: [266984]
        automated match to d4ntka_
        complexed with 2k8, zn
      4. 2531926Domain d4ntmd_: 4ntm D: [266985]
        automated match to d4ntka_
        complexed with 2k8, zn
      5. 2531927Domain d4ntme_: 4ntm E: [266986]
        automated match to d4ntka_
        complexed with 2k8, zn
      6. 2531928Domain d4ntmf_: 4ntm F: [266987]
        automated match to d4ntka_
        complexed with 2k8, zn
    6. Domains for 4ntn:
      1. 2531917Domain d4ntna_: 4ntn A: [257999]
        automated match to d3qn9a_
        complexed with fmt, zn
      2. 2531918Domain d4ntnb_: 4ntn B: [263226]
        automated match to d4ntka_
        complexed with fmt, zn
      3. 2531919Domain d4ntnc_: 4ntn C: [263227]
        automated match to d4ntka_
        complexed with fmt, zn
      4. 2531920Domain d4ntnd_: 4ntn D: [259410]
        automated match to d3qn9a_
        complexed with fmt, zn
      5. 2531921Domain d4ntne_: 4ntn E: [263228]
        automated match to d4ntka_
        complexed with fmt, zn
      6. 2531922Domain d4ntnf_: 4ntn F: [263229]
        automated match to d4ntka_
        complexed with fmt, zn
  7. 2531943Escherichia coli [TaxId:83333] [257997] (1 PDB entry)
  8. 2531945Human (Homo sapiens) [TaxId:9606] [225725] (1 PDB entry)
  9. 2531958Pseudomonas aeruginosa [TaxId:287] [230992] (2 PDB entries)
    1. Domains for 2oba:
      1. 2531959Domain d2obaa1: 2oba A:2-118 [230994]
        Other proteins in same PDB: d2obaa2, d2obab2, d2obac2, d2obad2, d2obae2, d2obaf2
        automated match to d3i2ba_
        complexed with zn
      2. 2531960Domain d2obab1: 2oba B:2-118 [230995]
        Other proteins in same PDB: d2obaa2, d2obab2, d2obac2, d2obad2, d2obae2, d2obaf2
        automated match to d3i2ba_
        complexed with zn
      3. 2531961Domain d2obac1: 2oba C:2-118 [230993]
        Other proteins in same PDB: d2obaa2, d2obab2, d2obac2, d2obad2, d2obae2, d2obaf2
        automated match to d3i2ba_
        complexed with zn
      4. 2531962Domain d2obad1: 2oba D:2-118 [230996]
        Other proteins in same PDB: d2obaa2, d2obab2, d2obac2, d2obad2, d2obae2, d2obaf2
        automated match to d3i2ba_
        complexed with zn
      5. 2531963Domain d2obae1: 2oba E:2-118 [230997]
        Other proteins in same PDB: d2obaa2, d2obab2, d2obac2, d2obad2, d2obae2, d2obaf2
        automated match to d3i2ba_
        complexed with zn
      6. 2531964Domain d2obaf1: 2oba F:2-118 [230998]
        Other proteins in same PDB: d2obaa2, d2obab2, d2obac2, d2obad2, d2obae2, d2obaf2
        automated match to d3i2ba_
        complexed with zn
    2. Domain for 4aey:
  10. 2531966Pyrococcus horikoshii OT3 [TaxId:70601] [255116] (2 PDB entries)
    1. Domains for 2dj6:
      1. 2531967Domain d2dj6a_: 2dj6 A: [241575]
        automated match to d2obaa_
      2. 2531968Domain d2dj6b_: 2dj6 B: [241576]
        automated match to d2obaa_
      3. 2531969Domain d2dj6c_: 2dj6 C: [241577]
        automated match to d2obaa_
    2. Domains for 2dtt:
      1. 2531970Domain d2dtta_: 2dtt A: [241646]
        automated match to d2obaa_
        complexed with h4b
      2. 2531971Domain d2dttb_: 2dtt B: [241647]
        automated match to d2obaa_
        complexed with h4b
      3. 2531972Domain d2dttc_: 2dtt C: [241648]
        automated match to d2obaa_
        complexed with h4b
      4. 2531973Domain d2dttd_: 2dtt D: [241649]
        automated match to d2obaa_
        complexed with h4b
      5. 2531974Domain d2dtte_: 2dtt E: [241650]
        automated match to d2obaa_
        complexed with h4b
      6. 2531975Domain d2dttf_: 2dtt F: [241651]
        automated match to d2obaa_
        complexed with h4b
  11. 2531976Unclassified mammalia [TaxId:1002697] [346371] (1 PDB entry)
  12. 2531985Vibrio cholerae [TaxId:243277] [267860] (1 PDB entry)
  13. 2531990Yersinia pestis [TaxId:632] [311332] (1 PDB entry)
  14. 2531992Zebrafish (Danio rerio) [TaxId:7955] [327451] (2 PDB entries)
    1. Domains for 5ll1:
      1. 2531993Domain d5ll1a1: 5ll1 A:8-142 [328959]
        automated match to d4n9sa1
      2. 2531994Domain d5ll1a2: 5ll1 A:143-294 [328960]
        automated match to d4n9sa2
      3. 2531995Domain d5ll1b1: 5ll1 B:8-142 [329058]
        automated match to d4n9sa1
      4. 2531996Domain d5ll1b2: 5ll1 B:143-294 [329059]
        automated match to d4n9sa2
      5. 2531997Domain d5ll1c1: 5ll1 C:8-142 [328955]
        automated match to d4n9sa1
      6. 2531998Domain d5ll1c2: 5ll1 C:143-294 [328956]
        automated match to d4n9sa2
      7. 2531999Domain d5ll1d1: 5ll1 D:8-142 [329088]
        automated match to d4n9sa1
      8. 2532000Domain d5ll1d2: 5ll1 D:143-294 [329089]
        automated match to d4n9sa2
      9. 2532001Domain d5ll1e1: 5ll1 E:8-142 [329163]
        automated match to d4n9sa1
      10. 2532002Domain d5ll1e2: 5ll1 E:143-294 [329164]
        automated match to d4n9sa2
      11. 2532003Domain d5ll1f1: 5ll1 F:8-142 [328992]
        automated match to d4n9sa1
      12. 2532004Domain d5ll1f2: 5ll1 F:143-294 [328993]
        automated match to d4n9sa2
      13. 2532005Domain d5ll1g1: 5ll1 G:8-142 [329007]
        automated match to d4n9sa1
      14. 2532006Domain d5ll1g2: 5ll1 G:143-294 [329008]
        automated match to d4n9sa2
      15. 2532007Domain d5ll1h1: 5ll1 H:8-142 [329010]
        automated match to d4n9sa1
      16. 2532008Domain d5ll1h2: 5ll1 H:143-294 [329011]
        automated match to d4n9sa2
    2. Domains for 5m98:
      1. 2532009Domain d5m98a1: 5m98 A:8-142 [327452]
        automated match to d4n9sa1
      2. 2532010Domain d5m98a2: 5m98 A:143-294 [327453]
        automated match to d4n9sa2
      3. 2532011Domain d5m98b1: 5m98 B:8-142 [327510]
        automated match to d4n9sa1
      4. 2532012Domain d5m98b2: 5m98 B:143-294 [327511]
        automated match to d4n9sa2
      5. 2532013Domain d5m98c1: 5m98 C:8-142 [327455]
        automated match to d4n9sa1
      6. 2532014Domain d5m98c2: 5m98 C:143-294 [327456]
        automated match to d4n9sa2
      7. 2532015Domain d5m98d1: 5m98 D:8-142 [327474]
        automated match to d4n9sa1
      8. 2532016Domain d5m98d2: 5m98 D:143-294 [327475]
        automated match to d4n9sa2
      9. 2532017Domain d5m98e1: 5m98 E:8-142 [327508]
        automated match to d4n9sa1
      10. 2532018Domain d5m98e2: 5m98 E:143-294 [327509]
        automated match to d4n9sa2
      11. 2532019Domain d5m98f1: 5m98 F:8-142 [327542]
        automated match to d4n9sa1
      12. 2532020Domain d5m98f2: 5m98 F:143-294 [327543]
        automated match to d4n9sa2
      13. 2532021Domain d5m98g1: 5m98 G:8-142 [327520]
        automated match to d4n9sa1
      14. 2532022Domain d5m98g2: 5m98 G:143-294 [327521]
        automated match to d4n9sa2
      15. 2532023Domain d5m98h1: 5m98 H:8-142 [327458]
        automated match to d4n9sa1
      16. 2532024Domain d5m98h2: 5m98 H:143-294 [327459]
        automated match to d4n9sa2

More info for Protein automated matches from d.96.1.0: automated matches

Timeline for Protein automated matches from d.96.1.0: automated matches: