Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1396887Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 1431831Fold d.131: DNA clamp [55978] (1 superfamily)
    contains two helices and two beta sheets
    duplication: fold has internal pseudo two-fold symmetry
  4. 1431832Superfamily d.131.1: DNA clamp [55979] (3 families) (S)
  5. 1432017Family d.131.1.2: DNA polymerase processivity factor [55983] (5 proteins)
    duplication: consists of two domains of this fold
  6. 1432160Protein automated matches [227006] (3 species)
    not a true protein

Species:

  1. 1432161Pyrococcus furiosus [TaxId:2261] [225778] (1 PDB entry)
  2. 1432164Saccharomyces cerevisiae [TaxId:4932] [232312] (4 PDB entries)
    1. Domains for 3gpn:
      1. 1432165Domain d3gpna1: 3gpn A:1-126 [232313]
        automated match to d1plqa1
        mutant
      2. 1432166Domain d3gpna2: 3gpn A:127-253 [232314]
        automated match to d1plqa2
        mutant
    2. Domain for 3l0w:
    3. Domains for 3l10:
      1. 1432168Domain d3l10a1: 3l10 A:1-126 [232750]
        automated match to d1plqa1
      2. 1432169Domain d3l10a2: 3l10 A:127-163 [232795]
        automated match to d1plqa2
    4. Domain for 3pge:
  3. 1432171Saccharomyces cerevisiae [TaxId:559292] [233826] (2 PDB entries)
    1. Domains for 3v60:
      1. 1432172Domain d3v60b1: 3v60 B:1-126 [233827]
        Other proteins in same PDB: d3v60a_
        automated match to d1plqa1
        protein/DNA complex; complexed with so4
      2. 1432173Domain d3v60b2: 3v60 B:127-256 [233828]
        Other proteins in same PDB: d3v60a_
        automated match to d1plqa2
        protein/DNA complex; complexed with so4
    2. Domains for 3v61:
      1. 1432174Domain d3v61b1: 3v61 B:1-126 [233829]
        Other proteins in same PDB: d3v61a_
        automated match to d1plqa1
        protein/DNA complex; complexed with ba, neq
      2. 1432175Domain d3v61b2: 3v61 B:127-254 [233830]
        Other proteins in same PDB: d3v61a_
        automated match to d1plqa2
        protein/DNA complex; complexed with ba, neq

More info for Protein automated matches from d.131.1.2: DNA polymerase processivity factor

Timeline for Protein automated matches from d.131.1.2: DNA polymerase processivity factor:

  • Protein automated matches from d.131.1.2: DNA polymerase processivity factor is new in SCOPe 2.03-stable
  • Protein automated matches from d.131.1.2: DNA polymerase processivity factor appears in SCOPe 2.04
  • Protein automated matches from d.131.1.2: DNA polymerase processivity factor appears in the current release, SCOPe 2.08