SCOPe 2.03: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.03
Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
The nucleotide-binding modes of this and the next two folds/superfamilies are similar

Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families)

Family c.2.1.7: Aminoacid dehydrogenase-like, C-terminal domain [51883] (12 proteins)
extra N-terminal helix displaces the C-terminal helix (following strand 6) from its usual position creating a family nicotineamide-binding site

Protein automated matches [227005] (2 species)
not a true protein

Species:

Cow (Bos taurus) [TaxId:9913] [225674] (2 PDB entries)
1. Domains for 3etd:
  1. Domain d3etda2: 3etd A:209-501 [209640]
    Other proteins in same PDB: d3etda1, d3etdb1, d3etdc1, d3etdd1, d3etde1, d3etdf1
    automated match to d1nr7a1
    complexed with b1t, glu, gtp, ndp
  2. Domain d3etdb2: 3etd B:209-501 [209642]
    Other proteins in same PDB: d3etda1, d3etdb1, d3etdc1, d3etdd1, d3etde1, d3etdf1
    automated match to d1nr7a1
    complexed with b1t, glu, gtp, ndp
  3. Domain d3etdc2: 3etd C:209-501 [209644]
    Other proteins in same PDB: d3etda1, d3etdb1, d3etdc1, d3etdd1, d3etde1, d3etdf1
    automated match to d1nr7a1
    complexed with b1t, glu, gtp, ndp
  4. Domain d3etdd2: 3etd D:209-501 [209646]
    Other proteins in same PDB: d3etda1, d3etdb1, d3etdc1, d3etdd1, d3etde1, d3etdf1
    automated match to d1nr7a1
    complexed with b1t, glu, gtp, ndp
  5. Domain d3etde2: 3etd E:209-501 [209648]
    Other proteins in same PDB: d3etda1, d3etdb1, d3etdc1, d3etdd1, d3etde1, d3etdf1
    automated match to d1nr7a1
    complexed with b1t, glu, gtp, ndp
  6. Domain d3etdf2: 3etd F:209-501 [209650]
    Other proteins in same PDB: d3etda1, d3etdb1, d3etdc1, d3etdd1, d3etde1, d3etdf1
    automated match to d1nr7a1
    complexed with b1t, glu, gtp, ndp
2. Domains for 3etg:
  1. Domain d3etga2: 3etg A:209-501 [209652]
    Other proteins in same PDB: d3etga1, d3etgb1, d3etgc1, d3etgd1, d3etge1, d3etgf1
    automated match to d1nr7a1
    complexed with glu, gtp, gwd, ndp
  2. Domain d3etgb2: 3etg B:209-501 [209654]
    Other proteins in same PDB: d3etga1, d3etgb1, d3etgc1, d3etgd1, d3etge1, d3etgf1
    automated match to d1nr7a1
    complexed with glu, gtp, gwd, ndp
  3. Domain d3etgc2: 3etg C:209-501 [209656]
    Other proteins in same PDB: d3etga1, d3etgb1, d3etgc1, d3etgd1, d3etge1, d3etgf1
    automated match to d1nr7a1
    complexed with glu, gtp, gwd, ndp
  4. Domain d3etgd2: 3etg D:209-501 [209658]
    Other proteins in same PDB: d3etga1, d3etgb1, d3etgc1, d3etgd1, d3etge1, d3etgf1
    automated match to d1nr7a1
    complexed with glu, gtp, gwd, ndp
  5. Domain d3etge2: 3etg E:209-501 [209660]
    Other proteins in same PDB: d3etga1, d3etgb1, d3etgc1, d3etgd1, d3etge1, d3etgf1
    automated match to d1nr7a1
    complexed with glu, gtp, gwd, ndp
  6. Domain d3etgf2: 3etg F:209-501 [209662]
    Other proteins in same PDB: d3etga1, d3etgb1, d3etgc1, d3etgd1, d3etge1, d3etgf1
    automated match to d1nr7a1
    complexed with glu, gtp, gwd, ndp
Salmonella enterica [TaxId:90371] [226190] (1 PDB entry)
- Domains for 3t4e:
  1. Domain d3t4ea2: 3t4e A:107-288 [216677]
    Other proteins in same PDB: d3t4ea1, d3t4eb1
    automated match to d1vi2b1
    complexed with nad, po4
  2. Domain d3t4eb2: 3t4e B:107-286 [216679]
    Other proteins in same PDB: d3t4ea1, d3t4eb1
    automated match to d1vi2b1
    complexed with nad, po4

More info for Protein automated matches from c.2.1.7: Aminoacid dehydrogenase-like, C-terminal domain

Timeline for Protein automated matches from c.2.1.7: Aminoacid dehydrogenase-like, C-terminal domain:

Protein automated matches from c.2.1.7: Aminoacid dehydrogenase-like, C-terminal domain is new in SCOPe 2.03-stable
Protein automated matches from c.2.1.7: Aminoacid dehydrogenase-like, C-terminal domain appears in SCOPe 2.04
Protein automated matches from c.2.1.7: Aminoacid dehydrogenase-like, C-terminal domain appears in the current release, SCOPe 2.08