Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1565955Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 1565956Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 1573508Superfamily c.1.11: Enolase C-terminal domain-like [51604] (3 families) (S)
    binds metal ion (magnesium or manganese) in conserved site inside barrel
    N-terminal alpha+beta domain is common to this superfamily
  5. 1573610Family c.1.11.2: D-glucarate dehydratase-like [51609] (14 proteins)
  6. 1573780Protein automated matches [226997] (7 species)
    not a true protein

Species:

  1. 1573781Acidaminococcus sp. [TaxId:563191] [234735] (1 PDB entry)
  2. 1573784Actinobacillus succinogenes [TaxId:339671] [226437] (1 PDB entry)
  3. 1573789Agrobacterium tumefaciens [TaxId:176299] [226506] (4 PDB entries)
    1. Domain for 4hcd:
    2. Domains for 4hch:
      1. 1573790Domain d4hcha2: 4hch A:127-382 [222499]
        Other proteins in same PDB: d4hcha1, d4hchb1
        automated match to d1rvka1
        complexed with edo, gol, mg, na, pge, tla
      2. 1573791Domain d4hchb2: 4hch B:127-382 [222501]
        Other proteins in same PDB: d4hcha1, d4hchb1
        automated match to d1rvka1
        complexed with edo, gol, mg, na, pge, tla
    3. Domains for 4hcl:
      1. 1573794Domain d4hcla2: 4hcl A:127-382 [222503]
        Other proteins in same PDB: d4hcla1, d4hclb1
        automated match to d1rvka1
        complexed with llh, mg, pg4
      2. 1573795Domain d4hclb2: 4hcl B:127-382 [222505]
        Other proteins in same PDB: d4hcla1, d4hclb1
        automated match to d1rvka1
        complexed with llh, mg, pg4
    4. Domains for 4mmw:
      1. 1573792Domain d4mmwa2: 4mmw A:127-381 [235678]
        Other proteins in same PDB: d4mmwa1, d4mmwb1
        automated match to d4mmwb2
        complexed with cl, llh, mg, pge, xyh
      2. 1573793Domain d4mmwb2: 4mmw B:127-381 [228012]
        Other proteins in same PDB: d4mmwa1, d4mmwb1
        automated match to d4hcha2
        complexed with cl, llh, mg, pge, xyh
  4. Bradyrhizobium japonicum [TaxId:375] [255123] (2 PDB entries)
    1. Domains for 2dw6:
      1. 1573798Domain d2dw6a1: 2dw6 A:143-389 [131808]
        Other proteins in same PDB: d2dw6a2, d2dw6b2, d2dw6c2, d2dw6d2
        automated match to d1tzza1
        complexed with mg, tar, tla; mutant
      2. 1573799Domain d2dw6b1: 2dw6 B:143-389 [131810]
        Other proteins in same PDB: d2dw6a2, d2dw6b2, d2dw6c2, d2dw6d2
        automated match to d1tzza1
        complexed with mg, tar, tla; mutant
      3. 1573800Domain d2dw6c1: 2dw6 C:143-389 [131812]
        Other proteins in same PDB: d2dw6a2, d2dw6b2, d2dw6c2, d2dw6d2
        automated match to d1tzza1
        complexed with mg, tar, tla; mutant
      4. 1573801Domain d2dw6d1: 2dw6 D:143-389 [131814]
        Other proteins in same PDB: d2dw6a2, d2dw6b2, d2dw6c2, d2dw6d2
        automated match to d1tzza1
        complexed with mg, tar, tla; mutant
    2. Domains for 2dw7:
      1. 1573802Domain d2dw7a1: 2dw7 A:143-389 [131816]
        Other proteins in same PDB: d2dw7a2, d2dw7b2, d2dw7c2, d2dw7d2, d2dw7e2, d2dw7f2, d2dw7g2, d2dw7h2, d2dw7i2, d2dw7j2, d2dw7k2, d2dw7l2, d2dw7m2, d2dw7n2, d2dw7o2, d2dw7p2
        automated match to d1tzza1
        complexed with mg, srt
      2. 1573803Domain d2dw7b1: 2dw7 B:143-389 [131818]
        Other proteins in same PDB: d2dw7a2, d2dw7b2, d2dw7c2, d2dw7d2, d2dw7e2, d2dw7f2, d2dw7g2, d2dw7h2, d2dw7i2, d2dw7j2, d2dw7k2, d2dw7l2, d2dw7m2, d2dw7n2, d2dw7o2, d2dw7p2
        automated match to d1tzza1
        complexed with mg, srt
      3. 1573804Domain d2dw7c1: 2dw7 C:143-389 [131820]
        Other proteins in same PDB: d2dw7a2, d2dw7b2, d2dw7c2, d2dw7d2, d2dw7e2, d2dw7f2, d2dw7g2, d2dw7h2, d2dw7i2, d2dw7j2, d2dw7k2, d2dw7l2, d2dw7m2, d2dw7n2, d2dw7o2, d2dw7p2
        automated match to d1tzza1
        complexed with mg, srt
      4. 1573805Domain d2dw7d1: 2dw7 D:143-389 [131822]
        Other proteins in same PDB: d2dw7a2, d2dw7b2, d2dw7c2, d2dw7d2, d2dw7e2, d2dw7f2, d2dw7g2, d2dw7h2, d2dw7i2, d2dw7j2, d2dw7k2, d2dw7l2, d2dw7m2, d2dw7n2, d2dw7o2, d2dw7p2
        automated match to d1tzza1
        complexed with mg, srt
      5. 1573806Domain d2dw7e1: 2dw7 E:143-389 [131824]
        Other proteins in same PDB: d2dw7a2, d2dw7b2, d2dw7c2, d2dw7d2, d2dw7e2, d2dw7f2, d2dw7g2, d2dw7h2, d2dw7i2, d2dw7j2, d2dw7k2, d2dw7l2, d2dw7m2, d2dw7n2, d2dw7o2, d2dw7p2
        automated match to d1tzza1
        complexed with mg, srt
      6. 1573807Domain d2dw7f1: 2dw7 F:143-389 [131826]
        Other proteins in same PDB: d2dw7a2, d2dw7b2, d2dw7c2, d2dw7d2, d2dw7e2, d2dw7f2, d2dw7g2, d2dw7h2, d2dw7i2, d2dw7j2, d2dw7k2, d2dw7l2, d2dw7m2, d2dw7n2, d2dw7o2, d2dw7p2
        automated match to d1tzza1
        complexed with mg, srt
      7. 1573808Domain d2dw7g1: 2dw7 G:143-389 [131828]
        Other proteins in same PDB: d2dw7a2, d2dw7b2, d2dw7c2, d2dw7d2, d2dw7e2, d2dw7f2, d2dw7g2, d2dw7h2, d2dw7i2, d2dw7j2, d2dw7k2, d2dw7l2, d2dw7m2, d2dw7n2, d2dw7o2, d2dw7p2
        automated match to d1tzza1
        complexed with mg, srt
      8. 1573809Domain d2dw7h1: 2dw7 H:143-389 [131830]
        Other proteins in same PDB: d2dw7a2, d2dw7b2, d2dw7c2, d2dw7d2, d2dw7e2, d2dw7f2, d2dw7g2, d2dw7h2, d2dw7i2, d2dw7j2, d2dw7k2, d2dw7l2, d2dw7m2, d2dw7n2, d2dw7o2, d2dw7p2
        automated match to d1tzza1
        complexed with mg, srt
      9. 1573810Domain d2dw7i1: 2dw7 I:143-389 [131832]
        Other proteins in same PDB: d2dw7a2, d2dw7b2, d2dw7c2, d2dw7d2, d2dw7e2, d2dw7f2, d2dw7g2, d2dw7h2, d2dw7i2, d2dw7j2, d2dw7k2, d2dw7l2, d2dw7m2, d2dw7n2, d2dw7o2, d2dw7p2
        automated match to d1tzza1
        complexed with mg, srt
      10. 1573811Domain d2dw7j1: 2dw7 J:143-389 [131834]
        Other proteins in same PDB: d2dw7a2, d2dw7b2, d2dw7c2, d2dw7d2, d2dw7e2, d2dw7f2, d2dw7g2, d2dw7h2, d2dw7i2, d2dw7j2, d2dw7k2, d2dw7l2, d2dw7m2, d2dw7n2, d2dw7o2, d2dw7p2
        automated match to d1tzza1
        complexed with mg, srt
      11. 1573812Domain d2dw7k1: 2dw7 K:143-389 [131836]
        Other proteins in same PDB: d2dw7a2, d2dw7b2, d2dw7c2, d2dw7d2, d2dw7e2, d2dw7f2, d2dw7g2, d2dw7h2, d2dw7i2, d2dw7j2, d2dw7k2, d2dw7l2, d2dw7m2, d2dw7n2, d2dw7o2, d2dw7p2
        automated match to d1tzza1
        complexed with mg, srt
      12. 1573813Domain d2dw7l1: 2dw7 L:143-389 [131838]
        Other proteins in same PDB: d2dw7a2, d2dw7b2, d2dw7c2, d2dw7d2, d2dw7e2, d2dw7f2, d2dw7g2, d2dw7h2, d2dw7i2, d2dw7j2, d2dw7k2, d2dw7l2, d2dw7m2, d2dw7n2, d2dw7o2, d2dw7p2
        automated match to d1tzza1
        complexed with mg, srt
      13. 1573814Domain d2dw7m1: 2dw7 M:143-389 [131840]
        Other proteins in same PDB: d2dw7a2, d2dw7b2, d2dw7c2, d2dw7d2, d2dw7e2, d2dw7f2, d2dw7g2, d2dw7h2, d2dw7i2, d2dw7j2, d2dw7k2, d2dw7l2, d2dw7m2, d2dw7n2, d2dw7o2, d2dw7p2
        automated match to d1tzza1
        complexed with mg, srt
      14. 1573815Domain d2dw7n1: 2dw7 N:143-389 [131842]
        Other proteins in same PDB: d2dw7a2, d2dw7b2, d2dw7c2, d2dw7d2, d2dw7e2, d2dw7f2, d2dw7g2, d2dw7h2, d2dw7i2, d2dw7j2, d2dw7k2, d2dw7l2, d2dw7m2, d2dw7n2, d2dw7o2, d2dw7p2
        automated match to d1tzza1
        complexed with mg, srt
      15. 1573816Domain d2dw7o1: 2dw7 O:143-389 [131844]
        Other proteins in same PDB: d2dw7a2, d2dw7b2, d2dw7c2, d2dw7d2, d2dw7e2, d2dw7f2, d2dw7g2, d2dw7h2, d2dw7i2, d2dw7j2, d2dw7k2, d2dw7l2, d2dw7m2, d2dw7n2, d2dw7o2, d2dw7p2
        automated match to d1tzza1
        complexed with mg, srt
      16. 1573817Domain d2dw7p1: 2dw7 P:143-389 [131846]
        Other proteins in same PDB: d2dw7a2, d2dw7b2, d2dw7c2, d2dw7d2, d2dw7e2, d2dw7f2, d2dw7g2, d2dw7h2, d2dw7i2, d2dw7j2, d2dw7k2, d2dw7l2, d2dw7m2, d2dw7n2, d2dw7o2, d2dw7p2
        automated match to d1tzza1
        complexed with mg, srt
  5. 1573818Escherichia coli [TaxId:444449] [233282] (2 PDB entries)
    1. Domains for 3pwg:
      1. 1573819Domain d3pwga2: 3pwg A:138-446 [233284]
        Other proteins in same PDB: d3pwga1, d3pwgb1, d3pwgc1, d3pwgd1
        automated match to d1ec7a1
        complexed with glr, gol, mg; mutant
      2. 1573820Domain d3pwgb2: 3pwg B:138-446 [233283]
        Other proteins in same PDB: d3pwga1, d3pwgb1, d3pwgc1, d3pwgd1
        automated match to d1ec7a1
        complexed with glr, gol, mg; mutant
      3. 1573821Domain d3pwgd2: 3pwg D:138-446 [233286]
        Other proteins in same PDB: d3pwga1, d3pwgb1, d3pwgc1, d3pwgd1
        automated match to d1ec7a1
        complexed with glr, gol, mg; mutant
    2. Domains for 3pwi:
      1. 1573822Domain d3pwia2: 3pwi A:138-446 [233290]
        Other proteins in same PDB: d3pwia1, d3pwib1
        automated match to d1ec7a1
        complexed with glr, gol, mg; mutant
      2. 1573823Domain d3pwib2: 3pwi B:138-446 [233291]
        Other proteins in same PDB: d3pwia1, d3pwib1
        automated match to d1ec7a1
        complexed with glr, gol, mg; mutant
  6. 1573824Pseudomonas putida [TaxId:303] [228631] (5 PDB entries)
    1. Domains for 3uxk:
      1. 1573829Domain d3uxka2: 3uxk A:133-359 [233813]
        Other proteins in same PDB: d3uxka1, d3uxkb1, d3uxkc1, d3uxkd1
        automated match to d4hncb2
        complexed with bho, mg
      2. 1573830Domain d3uxkb2: 3uxk B:133-359 [233819]
        Other proteins in same PDB: d3uxka1, d3uxkb1, d3uxkc1, d3uxkd1
        automated match to d4hncb2
        complexed with bho, mg
      3. 1573831Domain d3uxkc2: 3uxk C:133-359 [233817]
        Other proteins in same PDB: d3uxka1, d3uxkb1, d3uxkc1, d3uxkd1
        automated match to d4hncb2
        complexed with bho, mg
      4. 1573832Domain d3uxkd2: 3uxk D:133-359 [233815]
        Other proteins in same PDB: d3uxka1, d3uxkb1, d3uxkc1, d3uxkd1
        automated match to d4hncb2
        complexed with bho, mg
    2. Domains for 3uxl:
      1. 1573835Domain d3uxlc2: 3uxl C:133-359 [239881]
        Other proteins in same PDB: d3uxla1, d3uxlb1, d3uxlc1, d3uxld1
        automated match to d3uxkd2
        complexed with cfi, mg
      2. 1573836Domain d3uxld2: 3uxl D:133-359 [239883]
        Other proteins in same PDB: d3uxla1, d3uxlb1, d3uxlc1, d3uxld1
        automated match to d3uxkd2
        complexed with cfi, mg
    3. Domains for 4fp1:
      1. 1573825Domain d4fp1a2: 4fp1 A:133-359 [237251]
        Other proteins in same PDB: d4fp1a1, d4fp1b1
        automated match to d3uxkd2
        complexed with bfm, mg
      2. 1573826Domain d4fp1b2: 4fp1 B:133-359 [237252]
        Other proteins in same PDB: d4fp1a1, d4fp1b1
        automated match to d3uxkd2
        complexed with bfm, mg
    4. Domains for 4hnc:
      1. 1573833Domain d4hnca2: 4hnc A:133-359 [234665]
        Other proteins in same PDB: d4hnca1, d4hncb1
        automated match to d4hncb2
        complexed with 0ut, mg
      2. 1573834Domain d4hncb2: 4hnc B:133-359 [228632]
        Other proteins in same PDB: d4hnca1, d4hncb1
        automated match to d1dtna1
        complexed with 0ut, mg
    5. Domains for 4m6u:
      1. 1573827Domain d4m6ua2: 4m6u A:133-359 [237297]
        Other proteins in same PDB: d4m6ua1, d4m6ub1
        automated match to d3uxkd2
        complexed with mg, ttn
      2. 1573828Domain d4m6ub2: 4m6u B:133-359 [237299]
        Other proteins in same PDB: d4m6ua1, d4m6ub1
        automated match to d3uxkd2
        complexed with mg, ttn
  7. 1573837Salmonella typhimurium [TaxId:602] [225624] (1 PDB entry)

More info for Protein automated matches from c.1.11.2: D-glucarate dehydratase-like

Timeline for Protein automated matches from c.1.11.2: D-glucarate dehydratase-like: