Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1336837Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 1336838Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 1343755Superfamily c.1.11: Enolase C-terminal domain-like [51604] (3 families) (S)
    binds metal ion (magnesium or manganese) in conserved site inside barrel
    N-terminal alpha+beta domain is common to this superfamily
  5. 1343858Family c.1.11.2: D-glucarate dehydratase-like [51609] (14 proteins)
  6. 1344048Protein automated matches [226997] (6 species)
    not a true protein

Species:

  1. 1344049Acidaminococcus sp. [TaxId:563191] [234735] (1 PDB entry)
  2. 1344052Actinobacillus succinogenes [TaxId:339671] [226437] (1 PDB entry)
  3. 1344057Agrobacterium tumefaciens [TaxId:176299] [226506] (4 PDB entries)
    1. Domain for 4hcd:
    2. Domains for 4hch:
      1. 1344058Domain d4hcha2: 4hch A:127-382 [222499]
        Other proteins in same PDB: d4hcha1, d4hchb1
        automated match to d1rvka1
        complexed with edo, gol, mg, na, pge, tla
      2. 1344059Domain d4hchb2: 4hch B:127-382 [222501]
        Other proteins in same PDB: d4hcha1, d4hchb1
        automated match to d1rvka1
        complexed with edo, gol, mg, na, pge, tla
    3. Domains for 4hcl:
      1. 1344062Domain d4hcla2: 4hcl A:127-382 [222503]
        Other proteins in same PDB: d4hcla1, d4hclb1
        automated match to d1rvka1
        complexed with llh, mg, pg4
      2. 1344063Domain d4hclb2: 4hcl B:127-382 [222505]
        Other proteins in same PDB: d4hcla1, d4hclb1
        automated match to d1rvka1
        complexed with llh, mg, pg4
    4. Domains for 4mmw:
      1. 1344060Domain d4mmwa2: 4mmw A:127-381 [235678]
        Other proteins in same PDB: d4mmwa1, d4mmwb1
        automated match to d4mmwb2
        complexed with cl, llh, mg, pge, xyh
      2. 1344061Domain d4mmwb2: 4mmw B:127-381 [228012]
        Other proteins in same PDB: d4mmwa1, d4mmwb1
        automated match to d4hcha2
        complexed with cl, llh, mg, pge, xyh
  4. 1344065Escherichia coli [TaxId:444449] [233282] (2 PDB entries)
    1. Domains for 3pwg:
      1. 1344066Domain d3pwga2: 3pwg A:138-446 [233284]
        Other proteins in same PDB: d3pwga1, d3pwgb1, d3pwgc1, d3pwgd1
        automated match to d1ec7a1
        complexed with glr, gol, mg; mutant
      2. 1344067Domain d3pwgb2: 3pwg B:138-446 [233283]
        Other proteins in same PDB: d3pwga1, d3pwgb1, d3pwgc1, d3pwgd1
        automated match to d1ec7a1
        complexed with glr, gol, mg; mutant
      3. 1344068Domain d3pwgd2: 3pwg D:138-446 [233286]
        Other proteins in same PDB: d3pwga1, d3pwgb1, d3pwgc1, d3pwgd1
        automated match to d1ec7a1
        complexed with glr, gol, mg; mutant
    2. Domains for 3pwi:
      1. 1344069Domain d3pwia2: 3pwi A:138-446 [233290]
        Other proteins in same PDB: d3pwia1, d3pwib1
        automated match to d1ec7a1
        complexed with glr, gol, mg; mutant
      2. 1344070Domain d3pwib2: 3pwi B:138-446 [233291]
        Other proteins in same PDB: d3pwia1, d3pwib1
        automated match to d1ec7a1
        complexed with glr, gol, mg; mutant
  5. 1344071Pseudomonas putida [TaxId:303] [228631] (4 PDB entries)
    1. Domains for 3uxk:
      1. 1344076Domain d3uxka2: 3uxk A:133-359 [233813]
        Other proteins in same PDB: d3uxka1, d3uxkb1, d3uxkc1, d3uxkd1
        automated match to d4hncb2
        complexed with bho, mg
      2. 1344077Domain d3uxkb2: 3uxk B:133-359 [233819]
        Other proteins in same PDB: d3uxka1, d3uxkb1, d3uxkc1, d3uxkd1
        automated match to d4hncb2
        complexed with bho, mg
      3. 1344078Domain d3uxkc2: 3uxk C:133-359 [233817]
        Other proteins in same PDB: d3uxka1, d3uxkb1, d3uxkc1, d3uxkd1
        automated match to d4hncb2
        complexed with bho, mg
      4. 1344079Domain d3uxkd2: 3uxk D:133-359 [233815]
        Other proteins in same PDB: d3uxka1, d3uxkb1, d3uxkc1, d3uxkd1
        automated match to d4hncb2
        complexed with bho, mg
    2. Domains for 4fp1:
      1. 1344072Domain d4fp1a2: 4fp1 A:133-359 [237251]
        Other proteins in same PDB: d4fp1a1, d4fp1b1
        automated match to d3uxkd2
        complexed with bfm, mg
      2. 1344073Domain d4fp1b2: 4fp1 B:133-359 [237252]
        Other proteins in same PDB: d4fp1a1, d4fp1b1
        automated match to d3uxkd2
        complexed with bfm, mg
    3. Domains for 4hnc:
      1. 1344080Domain d4hnca2: 4hnc A:133-359 [234665]
        Other proteins in same PDB: d4hnca1, d4hncb1
        automated match to d4hncb2
        complexed with 0ut, mg
      2. 1344081Domain d4hncb2: 4hnc B:133-359 [228632]
        Other proteins in same PDB: d4hnca1, d4hncb1
        automated match to d1dtna1
        complexed with 0ut, mg
    4. Domains for 4m6u:
      1. 1344074Domain d4m6ua2: 4m6u A:133-359 [237297]
        Other proteins in same PDB: d4m6ua1, d4m6ub1
        automated match to d3uxkd2
        complexed with mg, ttn
      2. 1344075Domain d4m6ub2: 4m6u B:133-359 [237299]
        Other proteins in same PDB: d4m6ua1, d4m6ub1
        automated match to d3uxkd2
        complexed with mg, ttn
  6. 1344082Salmonella typhimurium [TaxId:602] [225624] (1 PDB entry)

More info for Protein automated matches from c.1.11.2: D-glucarate dehydratase-like

Timeline for Protein automated matches from c.1.11.2: D-glucarate dehydratase-like: