Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2120181Fold c.48: TK C-terminal domain-like [52921] (1 superfamily)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 13245, strand 1 is antiparallel to the rest
  4. 2120182Superfamily c.48.1: TK C-terminal domain-like [52922] (4 families) (S)
  5. 2120348Family c.48.1.0: automated matches [227237] (1 protein)
    not a true family
  6. 2120349Protein automated matches [226991] (9 species)
    not a true protein

Species:

  1. 2120350Bacillus anthracis [TaxId:261594] [255873] (3 PDB entries)
    1. Domains for 3hyl:
      1. 2120355Domain d3hyla3: 3hyl A:528-666 [246616]
        Other proteins in same PDB: d3hyla1, d3hyla2, d3hylb1, d3hylb2
        automated match to d1itza3
        complexed with cl, fmt, gol, mg, peg, so4
      2. 2120356Domain d3hylb3: 3hyl B:528-666 [246619]
        Other proteins in same PDB: d3hyla1, d3hyla2, d3hylb1, d3hylb2
        automated match to d1itza3
        complexed with cl, fmt, gol, mg, peg, so4
    2. Domains for 3k95:
      1. 2120353Domain d3k95a3: 3k95 A:528-666 [305682]
        Other proteins in same PDB: d3k95a1, d3k95a2, d3k95b1, d3k95b2
        automated match to d3m49a3
        complexed with acy, btb, cl, fmt, gol, mg, peg, pg5, so4, tdp
      2. 2120354Domain d3k95b3: 3k95 B:528-666 [305685]
        Other proteins in same PDB: d3k95a1, d3k95a2, d3k95b1, d3k95b2
        automated match to d3m49a3
        complexed with acy, btb, cl, fmt, gol, mg, peg, pg5, so4, tdp
    3. Domains for 3m49:
      1. 2120351Domain d3m49a3: 3m49 A:528-666 [247601]
        Other proteins in same PDB: d3m49a1, d3m49a2, d3m49b1, d3m49b2
        automated match to d1itza3
        complexed with acy, btb, fmt, gol, mg, peg, pg5, so4, tdp, trs
      2. 2120352Domain d3m49b3: 3m49 B:528-666 [247604]
        Other proteins in same PDB: d3m49a1, d3m49a2, d3m49b1, d3m49b2
        automated match to d1itza3
        complexed with acy, btb, fmt, gol, mg, peg, pg5, so4, tdp, trs
  2. 2120357Bacillus stearothermophilus [TaxId:1422] [225586] (3 PDB entries)
    1. Domains for 3duf:
      1. 2120366Domain d3dufb2: 3duf B:187-324 [199278]
        Other proteins in same PDB: d3dufa_, d3dufb1, d3dufc_, d3dufd1, d3dufe_, d3duff1, d3dufg_, d3dufh1, d3dufi_, d3dufj_
        automated match to d1umdb2
        complexed with k, mg, r1t
      2. 2120367Domain d3dufd2: 3duf D:187-324 [199280]
        Other proteins in same PDB: d3dufa_, d3dufb1, d3dufc_, d3dufd1, d3dufe_, d3duff1, d3dufg_, d3dufh1, d3dufi_, d3dufj_
        automated match to d1umdb2
        complexed with k, mg, r1t
      3. 2120368Domain d3duff2: 3duf F:187-324 [199282]
        Other proteins in same PDB: d3dufa_, d3dufb1, d3dufc_, d3dufd1, d3dufe_, d3duff1, d3dufg_, d3dufh1, d3dufi_, d3dufj_
        automated match to d1umdb2
        complexed with k, mg, r1t
      4. 2120369Domain d3dufh2: 3duf H:187-324 [199284]
        Other proteins in same PDB: d3dufa_, d3dufb1, d3dufc_, d3dufd1, d3dufe_, d3duff1, d3dufg_, d3dufh1, d3dufi_, d3dufj_
        automated match to d1umdb2
        complexed with k, mg, r1t
    2. Domains for 3dv0:
      1. 2120362Domain d3dv0b2: 3dv0 B:187-324 [199288]
        Other proteins in same PDB: d3dv0a_, d3dv0b1, d3dv0c_, d3dv0d1, d3dv0e_, d3dv0f1, d3dv0g_, d3dv0h1, d3dv0i_, d3dv0j_
        automated match to d1umdb2
        complexed with k, mg, pyr, tpw
      2. 2120363Domain d3dv0d2: 3dv0 D:187-324 [199290]
        Other proteins in same PDB: d3dv0a_, d3dv0b1, d3dv0c_, d3dv0d1, d3dv0e_, d3dv0f1, d3dv0g_, d3dv0h1, d3dv0i_, d3dv0j_
        automated match to d1umdb2
        complexed with k, mg, pyr, tpw
      3. 2120364Domain d3dv0f2: 3dv0 F:187-324 [199292]
        Other proteins in same PDB: d3dv0a_, d3dv0b1, d3dv0c_, d3dv0d1, d3dv0e_, d3dv0f1, d3dv0g_, d3dv0h1, d3dv0i_, d3dv0j_
        automated match to d1umdb2
        complexed with k, mg, pyr, tpw
      4. 2120365Domain d3dv0h2: 3dv0 H:187-324 [199294]
        Other proteins in same PDB: d3dv0a_, d3dv0b1, d3dv0c_, d3dv0d1, d3dv0e_, d3dv0f1, d3dv0g_, d3dv0h1, d3dv0i_, d3dv0j_
        automated match to d1umdb2
        complexed with k, mg, pyr, tpw
    3. Domains for 3dva:
      1. 2120358Domain d3dvab2: 3dva B:187-324 [199296]
        Other proteins in same PDB: d3dvaa_, d3dvab1, d3dvac_, d3dvad1, d3dvae_, d3dvaf1, d3dvag_, d3dvah1, d3dvai_, d3dvaj_
        automated match to d1umdb2
        complexed with k, mg, tpw
      2. 2120359Domain d3dvad2: 3dva D:187-324 [199298]
        Other proteins in same PDB: d3dvaa_, d3dvab1, d3dvac_, d3dvad1, d3dvae_, d3dvaf1, d3dvag_, d3dvah1, d3dvai_, d3dvaj_
        automated match to d1umdb2
        complexed with k, mg, tpw
      3. 2120360Domain d3dvaf2: 3dva F:187-324 [199300]
        Other proteins in same PDB: d3dvaa_, d3dvab1, d3dvac_, d3dvad1, d3dvae_, d3dvaf1, d3dvag_, d3dvah1, d3dvai_, d3dvaj_
        automated match to d1umdb2
        complexed with k, mg, tpw
      4. 2120361Domain d3dvah2: 3dva H:187-324 [199302]
        Other proteins in same PDB: d3dvaa_, d3dvab1, d3dvac_, d3dvad1, d3dvae_, d3dvaf1, d3dvag_, d3dvah1, d3dvai_, d3dvaj_
        automated match to d1umdb2
        complexed with k, mg, tpw
  3. 2120370Escherichia coli [TaxId:83334] [255939] (3 PDB entries)
    1. Domains for 3lpl:
      1. 2120375Domain d3lpla3: 3lpl A:701-886 [247488]
        Other proteins in same PDB: d3lpla1, d3lpla2, d3lplb1, d3lplb2
        automated match to d2ieaa3
        complexed with epe, mg, po4, tdp; mutant
      2. 2120376Domain d3lplb3: 3lpl B:701-886 [247491]
        Other proteins in same PDB: d3lpla1, d3lpla2, d3lplb1, d3lplb2
        automated match to d2ieaa3
        complexed with epe, mg, po4, tdp; mutant
    2. Domains for 3lq2:
      1. 2120371Domain d3lq2a3: 3lq2 A:701-886 [247498]
        Other proteins in same PDB: d3lq2a1, d3lq2a2, d3lq2b1, d3lq2b2
        automated match to d2ieaa3
        complexed with epe, mg, po4, tdp; mutant
      2. 2120372Domain d3lq2b3: 3lq2 B:701-886 [247501]
        Other proteins in same PDB: d3lq2a1, d3lq2a2, d3lq2b1, d3lq2b2
        automated match to d2ieaa3
        complexed with epe, mg, po4, tdp; mutant
    3. Domains for 3lq4:
      1. 2120373Domain d3lq4a3: 3lq4 A:701-886 [247504]
        Other proteins in same PDB: d3lq4a1, d3lq4a2, d3lq4b1, d3lq4b2
        automated match to d2ieaa3
        complexed with epe, mg, po4, tdp; mutant
      2. 2120374Domain d3lq4b3: 3lq4 B:701-886 [247507]
        Other proteins in same PDB: d3lq4a1, d3lq4a2, d3lq4b1, d3lq4b2
        automated match to d2ieaa3
        complexed with epe, mg, po4, tdp; mutant
  4. 2120377Human (Homo sapiens) [TaxId:9606] [226799] (1 PDB entry)
  5. 2120380Lactobacillus salivarius [TaxId:362948] [260147] (2 PDB entries)
    1. Domain for 4c7v:
    2. Domain for 4c7x:
  6. 2281341Escherichia coli [TaxId:83333] [324642] (1 PDB entry)
  7. 2285550Scheffersomyces stipitis [TaxId:322104] [328851] (7 PDB entries)
    1. Domain for 5hgx:
    2. Domain for 5hje:
    3. Domain for 5hyv:
    4. Domain for 5i4i:
    5. Domain for 5i51:
    6. Domain for 5i5e:
    7. Domain for 5i5g:
  8. 2291044Neisseria gonorrhoeae [TaxId:521006] [334345] (1 PDB entry)
  9. 2291787Chlamydomonas reinhardtii [TaxId:3055] [335088] (2 PDB entries)
    1. Domains for 5nd5:
      1. 2291798Domain d5nd5b3: 5nd5 B:580-717 [335099]
        Other proteins in same PDB: d5nd5a1, d5nd5a2, d5nd5b1, d5nd5b2
        automated match to d1itza3
        complexed with mg, tpp
      2. 2291868Domain d5nd5a3: 5nd5 A:580-717 [335169]
        Other proteins in same PDB: d5nd5a1, d5nd5a2, d5nd5b1, d5nd5b2
        automated match to d1itza3
        complexed with mg, tpp
    2. Domains for 5nd6:
      1. 2291788Domain d5nd6a3: 5nd6 A:580-717 [335089]
        Other proteins in same PDB: d5nd6a1, d5nd6a2, d5nd6b1, d5nd6b2
        automated match to d1itza3
        complexed with edo
      2. 2291912Domain d5nd6b3: 5nd6 B:580-718 [335213]
        Other proteins in same PDB: d5nd6a1, d5nd6a2, d5nd6b1, d5nd6b2
        automated match to d1itza3
        complexed with edo

More info for Protein automated matches from c.48.1.0: automated matches

Timeline for Protein automated matches from c.48.1.0: automated matches: