SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2120181Fold c.48: TK C-terminal domain-like [52921] (1 superfamily)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 13245, strand 1 is antiparallel to the rest
  4. 2120182Superfamily c.48.1: TK C-terminal domain-like [52922] (4 families) (S)
  5. 2120348Family c.48.1.0: automated matches [227237] (1 protein)
    not a true family
  6. 2120349Protein automated matches [226991] (7 species)
    not a true protein

Species:

  1. 2120350Bacillus anthracis [TaxId:261594] [255873] (3 PDB entries)
    1. Domains for 3hyl:
      1. 2120355Domain d3hyla3: 3hyl A:528-666 [246616]
        Other proteins in same PDB: d3hyla1, d3hyla2, d3hylb1, d3hylb2
        automated match to d1itza3
        complexed with cl, fmt, gol, mg, peg, so4
      2. 2120356Domain d3hylb3: 3hyl B:528-666 [246619]
        Other proteins in same PDB: d3hyla1, d3hyla2, d3hylb1, d3hylb2
        automated match to d1itza3
        complexed with cl, fmt, gol, mg, peg, so4
    2. Domains for 3k95:
      1. 2120353Domain d3k95a3: 3k95 A:528-666 [305682]
        Other proteins in same PDB: d3k95a1, d3k95a2, d3k95b1, d3k95b2
        automated match to d3m49a3
        complexed with acy, btb, cl, fmt, gol, mg, peg, pg5, so4, tdp
      2. 2120354Domain d3k95b3: 3k95 B:528-666 [305685]
        Other proteins in same PDB: d3k95a1, d3k95a2, d3k95b1, d3k95b2
        automated match to d3m49a3
        complexed with acy, btb, cl, fmt, gol, mg, peg, pg5, so4, tdp
    3. Domains for 3m49:
      1. 2120351Domain d3m49a3: 3m49 A:528-666 [247601]
        Other proteins in same PDB: d3m49a1, d3m49a2, d3m49b1, d3m49b2
        automated match to d1itza3
        complexed with acy, btb, fmt, gol, mg, peg, pg5, so4, tdp, trs
      2. 2120352Domain d3m49b3: 3m49 B:528-666 [247604]
        Other proteins in same PDB: d3m49a1, d3m49a2, d3m49b1, d3m49b2
        automated match to d1itza3
        complexed with acy, btb, fmt, gol, mg, peg, pg5, so4, tdp, trs
  2. 2120357Bacillus stearothermophilus [TaxId:1422] [225586] (3 PDB entries)
    1. Domains for 3duf:
      1. 2120366Domain d3dufb2: 3duf B:187-324 [199278]
        Other proteins in same PDB: d3dufa_, d3dufb1, d3dufc_, d3dufd1, d3dufe_, d3duff1, d3dufg_, d3dufh1, d3dufi_, d3dufj_
        automated match to d1umdb2
        complexed with k, mg, r1t
      2. 2120367Domain d3dufd2: 3duf D:187-324 [199280]
        Other proteins in same PDB: d3dufa_, d3dufb1, d3dufc_, d3dufd1, d3dufe_, d3duff1, d3dufg_, d3dufh1, d3dufi_, d3dufj_
        automated match to d1umdb2
        complexed with k, mg, r1t
      3. 2120368Domain d3duff2: 3duf F:187-324 [199282]
        Other proteins in same PDB: d3dufa_, d3dufb1, d3dufc_, d3dufd1, d3dufe_, d3duff1, d3dufg_, d3dufh1, d3dufi_, d3dufj_
        automated match to d1umdb2
        complexed with k, mg, r1t
      4. 2120369Domain d3dufh2: 3duf H:187-324 [199284]
        Other proteins in same PDB: d3dufa_, d3dufb1, d3dufc_, d3dufd1, d3dufe_, d3duff1, d3dufg_, d3dufh1, d3dufi_, d3dufj_
        automated match to d1umdb2
        complexed with k, mg, r1t
    2. Domains for 3dv0:
      1. 2120362Domain d3dv0b2: 3dv0 B:187-324 [199288]
        Other proteins in same PDB: d3dv0a_, d3dv0b1, d3dv0c_, d3dv0d1, d3dv0e_, d3dv0f1, d3dv0g_, d3dv0h1, d3dv0i_, d3dv0j_
        automated match to d1umdb2
        complexed with k, mg, pyr, tpw
      2. 2120363Domain d3dv0d2: 3dv0 D:187-324 [199290]
        Other proteins in same PDB: d3dv0a_, d3dv0b1, d3dv0c_, d3dv0d1, d3dv0e_, d3dv0f1, d3dv0g_, d3dv0h1, d3dv0i_, d3dv0j_
        automated match to d1umdb2
        complexed with k, mg, pyr, tpw
      3. 2120364Domain d3dv0f2: 3dv0 F:187-324 [199292]
        Other proteins in same PDB: d3dv0a_, d3dv0b1, d3dv0c_, d3dv0d1, d3dv0e_, d3dv0f1, d3dv0g_, d3dv0h1, d3dv0i_, d3dv0j_
        automated match to d1umdb2
        complexed with k, mg, pyr, tpw
      4. 2120365Domain d3dv0h2: 3dv0 H:187-324 [199294]
        Other proteins in same PDB: d3dv0a_, d3dv0b1, d3dv0c_, d3dv0d1, d3dv0e_, d3dv0f1, d3dv0g_, d3dv0h1, d3dv0i_, d3dv0j_
        automated match to d1umdb2
        complexed with k, mg, pyr, tpw
    3. Domains for 3dva:
      1. 2120358Domain d3dvab2: 3dva B:187-324 [199296]
        Other proteins in same PDB: d3dvaa_, d3dvab1, d3dvac_, d3dvad1, d3dvae_, d3dvaf1, d3dvag_, d3dvah1, d3dvai_, d3dvaj_
        automated match to d1umdb2
        complexed with k, mg, tpw
      2. 2120359Domain d3dvad2: 3dva D:187-324 [199298]
        Other proteins in same PDB: d3dvaa_, d3dvab1, d3dvac_, d3dvad1, d3dvae_, d3dvaf1, d3dvag_, d3dvah1, d3dvai_, d3dvaj_
        automated match to d1umdb2
        complexed with k, mg, tpw
      3. 2120360Domain d3dvaf2: 3dva F:187-324 [199300]
        Other proteins in same PDB: d3dvaa_, d3dvab1, d3dvac_, d3dvad1, d3dvae_, d3dvaf1, d3dvag_, d3dvah1, d3dvai_, d3dvaj_
        automated match to d1umdb2
        complexed with k, mg, tpw
      4. 2120361Domain d3dvah2: 3dva H:187-324 [199302]
        Other proteins in same PDB: d3dvaa_, d3dvab1, d3dvac_, d3dvad1, d3dvae_, d3dvaf1, d3dvag_, d3dvah1, d3dvai_, d3dvaj_
        automated match to d1umdb2
        complexed with k, mg, tpw
  3. 2120370Escherichia coli [TaxId:83334] [255939] (3 PDB entries)
    1. Domains for 3lpl:
      1. 2120375Domain d3lpla3: 3lpl A:701-886 [247488]
        Other proteins in same PDB: d3lpla1, d3lpla2, d3lplb1, d3lplb2
        automated match to d2ieaa3
        complexed with epe, mg, po4, tdp; mutant
      2. 2120376Domain d3lplb3: 3lpl B:701-886 [247491]
        Other proteins in same PDB: d3lpla1, d3lpla2, d3lplb1, d3lplb2
        automated match to d2ieaa3
        complexed with epe, mg, po4, tdp; mutant
    2. Domains for 3lq2:
      1. 2120371Domain d3lq2a3: 3lq2 A:701-886 [247498]
        Other proteins in same PDB: d3lq2a1, d3lq2a2, d3lq2b1, d3lq2b2
        automated match to d2ieaa3
        complexed with epe, mg, po4, tdp; mutant
      2. 2120372Domain d3lq2b3: 3lq2 B:701-886 [247501]
        Other proteins in same PDB: d3lq2a1, d3lq2a2, d3lq2b1, d3lq2b2
        automated match to d2ieaa3
        complexed with epe, mg, po4, tdp; mutant
    3. Domains for 3lq4:
      1. 2120373Domain d3lq4a3: 3lq4 A:701-886 [247504]
        Other proteins in same PDB: d3lq4a1, d3lq4a2, d3lq4b1, d3lq4b2
        automated match to d2ieaa3
        complexed with epe, mg, po4, tdp; mutant
      2. 2120374Domain d3lq4b3: 3lq4 B:701-886 [247507]
        Other proteins in same PDB: d3lq4a1, d3lq4a2, d3lq4b1, d3lq4b2
        automated match to d2ieaa3
        complexed with epe, mg, po4, tdp; mutant
  4. 2120377Human (Homo sapiens) [TaxId:9606] [226799] (1 PDB entry)
  5. 2120380Lactobacillus salivarius [TaxId:362948] [260147] (2 PDB entries)
    1. Domain for 4c7v:
    2. Domain for 4c7x:
  6. 2281341Escherichia coli [TaxId:83333] [324642] (1 PDB entry)
  7. 2285550Scheffersomyces stipitis [TaxId:322104] [328851] (7 PDB entries)
    1. Domain for 5hgx:
    2. Domain for 5hje:
    3. Domain for 5hyv:
    4. Domain for 5i4i:
    5. Domain for 5i51:
    6. Domain for 5i5e:
    7. Domain for 5i5g:

More info for Protein automated matches from c.48.1.0: automated matches

Timeline for Protein automated matches from c.48.1.0: automated matches: